Gene detail

Detail information of MD05G1011900 Annotation

Gene ID	Annotation
MD05G1011900	Thioredoxin superfamily protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD05G1011900	mRNA	Chr05	2393618	2395168	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Prunus persica	Prupe.8G016900.1.p	1	Thioredoxin superfamily protein
Pyrus communis	PCP016730.1	1	-
Pyrus x bretschneideri	Pbr021231.1	1	-
Rosa multiflora	Rmu_sc0017670.1_g000001.1	1	-
Rosa multiflora	Rmu_sc0003910.1_g000011.1	1	-
Rubus occidentalis	Ro02_G35321	1	-
Fragaria vesca	mrna00924.1	1	Thioredoxin superfamily protein
Vitis vinifera	GSVIVT01010012001	1	thioredoxin M-type 4
Populus trichocarpa	Potri.002G073000.1	1	thioredoxin M-type 4
Populus trichocarpa	Potri.005G186800.1	1	thioredoxin M-type 4
Oryza sativa	LOC_Os12g08730.1	1	"thioredoxin, putative, expressed"
Zea mays	GRMZM2G181258_P01	1	protein_coding

Gene Ontology

GO term	Description	Category
GO:0006662	glycerol ether metabolic process	biological_process
GO:0045454	cell redox homeostasis	biological_process
GO:0009055	electron carrier activity	molecular_function
GO:0015035	protein disulfide oxidoreductase activity	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00085.16	Thioredoxin	77	178	1.60E-33

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	375.242
SRR5252888	dormant buds	no	dormant buds(0 month)	0.349782
SRR5252889	dormant buds	no	dormant buds(0 month)	1.89095
SRR5252886	dormant buds	no	dormant buds(1 months)	2.66597
SRR5252887	dormant buds	no	dormant buds(1 months)	1.10188
SRR5252884	dormant buds	no	dormant buds(2 months)	1.00554
SRR5252882	dormant buds	no	dormant buds(3 months)	3.02552
SRR5252883	dormant buds	no	dormant buds(3 months)	2.47261
SRR5252880	dormant buds	no	dormant buds(4 months)	2.51624
SRR5252881	dormant buds	no	dormant buds(4 months)	1.39646
SRR5252878	bud break	no	bud break	4.26063
SRR5252879	bud break	no	bud break	8.75435
SRR3744766	flower	no	mature	3.46573
SRR3744767	flower	no	mature	3.76495
SRR3744768	flower	no	mature	4.37239
SRR6308190	stigmas	no	open flowers	33.1025
SRR6308181	styles	no	open flowers	19.3012
SRR6308188	filaments	no	open flowers	3.04408
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0.2601
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	7.33841
SRR6308194	sepals	no	open flowers	38.5056
SRR6308193	receptacles	no	open flowers	15.0154
SRR6308189	ovaries	no	open flowers	26.1309
SRR3384922	fruit	no	1 week after full bloom	53.9481
SRR3384921	fruit	no	2 week after full bloom	20.8281
SRR3384920	fruit	no	3 week after full bloom	53.4435
SRR3384919	fruit	no	4 week after full bloom	28.273
SRR3384923	fruit	no	5 week after full bloom	47.6461
SRR3384918	fruit	no	6 week after full bloom	17.4966
SRR3384917	fruit	no	8 week after full bloom	33.363
SRR3384916	fruit	no	10 week after full bloom	23.6313
SRR3384915	fruit	no	12 week after full bloom	14.5296
SRR3384914	fruit	no	14 week after full bloom	17.881
SRR3384913	fruit	no	16 week after full bloom	10.0422
SRR3384912	fruit	no	18 week after full bloom	3.53405
SRR3384911	fruit	no	19 week after full bloom	14.5626
SRR3384910	fruit	no	20 week after full bloom	2.16247
SRR768128	whole fruit	no	25 days post anthesis	30.3843
SRR768129	whole fruit	no	35 days post anthesis	16.4504
SRR768130	whole fruit	no	60 days post anthesis	6.24469
SRR768131	whole fruit	no	87 days post anthesis	0.587554
SRR7343308	immature fruit flesh	no	immature	18.8695
SRR7343309	immature fruit flesh	no	immature	18.8582
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0.130585
SRR7403506	fruit	uninfected	mature	0.137944
SRR7403507	fruit	uninfected	mature	0
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0
SRR7403503	fruit	infected with penicillium expansum	mature	0
SRR7403505	fruit	infected with penicillium expansum	mature	0
SRR1613973	Central seeds	no	20DAPF	0.314184
SRR1613974	Central seeds	no	20DAPF	0.767472
SRR1613975	Central seeds	no	20DAPF	0.683788
SRR1613976	Lateral seeds	no	20DAPF	0.616506
SRR1613977	Lateral seeds	no	20DAPF	1.21217
SRR1613978	Lateral seeds	no	20DAPF	1.18645
SRR3744786	stem	no	mature	0.390118
SRR3744787	stem	no	mature	0.38653
SRR3744772	stem	no	mature	0.495633
SRX765691	seedling shoot apex	no	4-6 week old seedling	11.2141
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	15.6711
SRR1089478	leaf	Virus-free	plantlets	66.9988
SRR1089477	leaf	ASGV-infected	plantlets	84.9313
SRR767660	leaf	uninfected	fully developed	265.096
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	192.761
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	187.47
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	409.123
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	209.32
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	94.501
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	88.3447
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	155.714
SRR6308182	young leaf	no	immature leaves	26.0421
SRR3744769	leaf	no	mature	25.2852
SRR3744770	leaf	no	mature	27.7875
SRR3744771	leaf	no	mature	26.7568
SRR5405145	leaf	no	mature	144.487
SRR6320561	leaf	no	mature	257.595