Gene detail

Detail information of MD05G1027900 Annotation

Gene ID	Annotation
MD05G1027900	SET domain-containing protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0185

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD05G1027900	mRNA	Chr05	4535936	4538975	+

Sequences

CDS:

MD05G1027900

GAAAGCGCCGTGACGGAGATGAAGATGGAAATGGTGTAAAACTTTTGACGAGTTGAACCGAAAGCGCCGTGACGGAGATGGAGGTGGAGATGGAGATGAGGGCCGGGGAAGAAATAGAGATAGGACAAGACATAACGCCACCGCTCCCTCCGCTTTCTTCCTCTCTCCACCACTCCCTCCTCTCATCTCACTGCTCTTCCTGCTTCTCCCCTCTCCCTCCCCAACCCTTCCCTCCCCTCTTTACTCCTACCTTTCCCAACACTCCCTCCTCCTACTACTGCTCCTCCCTCTGCTCCTCCGCCGATTCTCCCCTCCACGTCTCCAGCGCCGAGCCCTACCTTCTCCTGCTTCTCCAATCCCACCCCTCCGCCTACCCCAACGGCGACTCCTCCGACCTCCGCGCCGCCCTCCGCCTCCTCCAATCCCTTCCCGCCACCTCCCCCTACCCTCGCGTAGCCGGCCTCCTGACGAATCGCCACAAACTCCTCCACCACCACGACCATAGGGTTCGCGACGGCGCCAGAGCCATGTTCCTCGCCAGGAAGATGCGGGATGAATCTCCGAATTTCTCTATCGATGCGACTATTGCCAACGTTGCTCCGCACGACGCCGTATTGGAGGAGGCCGTGCTGTCATTGGTGCTAACGAACGCCGTGGAGGTGCAGGATAAGACCGGGCGCACCCTTGGAATTTCCGTCTACGGTCCCAGCTTCTGCTGGATCAACCACAGCTGCTCCCCGAATGCTTGCTACCGCTTTTCTTTGATGACACCGCCAACGCCACCTTGTTGGCCCGAAACGGCGCTGCTGCGCATTGTCCCCTTCGGCCGCTCCTCCGGTCGTGCCACACAAATTGAGAATGAAAGCCGAGGTTATGGTCCAAGAGTGACGGTTAGGAGCATCAAGAGAATCAAGAAAGGCGAAGAAGTGACTGTTACTTACACTGATTTGTTGCAGCCTAAGGCAATGAGGCAGTCAGAGCTATGGTCAAGGTATCGGTTTATCTGCTCTTGTACGCGATGTAGTGCATCACCCCTAACCTACGTGGATCAAGCTTTGGAGGAAATATTTGCAGTCAATTCCAACTCCTCCAGTTTGAGTTTAGAAATAAACTTCAATAGAGATAAGGCAACGCAATTGTTGAGTGTTTACTTTGATGATGCTATTGACGACTACCTGTCGAGTGGCGATCCTGAATCTTCTTGTGAGAGGCTTGAGCATGCGTTCACACAAGGACTCTCTGATATGCAATTAGATTGCAACGGAGAAACATCTCAGCTGAGATACTGGTTGCACCCATTAAATTACCTCTCCCTAAATGCCTACACAACATTGGCTTCAGCGTATAAAATCCGTGCAACTGACATGATAGCTTTATGTTCTAAAATGGATGATCATCTGTTAAAAGCTTTGAACTTAAGCAGGACTAGTGCAGCATACTCCTTACTACTTGCTGGTGCAACTCACCATCTGTTCCGCTCTGAATCGTCTCTAATTGTATCTGTTGCAAATTTCTGGACAAGCGCAGGGGAGTCATTGTTAACTCTTGCTAAAAGCTCAGTCTGGAGTGAGTTTGTCCACCGGGATCTGCCTGTGTCAAATCCATGTTCCACTGCAAGTTATAGATGTCCAAAATGCTCATTGATAGACAAATTTGAAGCTTGTTTATTCTATGGTCAAGTTCAACATGCAGATTTTGACGATGTCTCAAGTGAATTCATTGATTGCGTCTCTAACTTTACACAGAATGTTTGGAATATTTTGGCTCTCAGTTGCCAGTACCTTAGATTGATTAAGAGTCCTATTGATTTCAGTTGGCTTGGTACCACAAAAGATTCCAGTGTAGGGGAAGTTCTGATTCGGTCTAGTGGCACTAAAGCGGGTTCTTGTGGGACTGAGAGAAGCATTTCTGGAAGTGAAGCAGAGGGATACACAGCCCAGGTACGGATATGTATTTTTAAGCTCGGTGTCCATTGCTTACTATATGGAGGATATCTAGCGAGCATATGTTATGGTAATTCCCATTTGACCTGTTATGTTCGTAATATTTTAGATATGGAAGGGATATTATTGAATCCTTGTCATGAACCAAATTGAGTTTGAGATCTTAGAAGTTAAATTATTCCTGTTTT

Protein:

Gene family

Gene family	Subfamily
Transcription Factors Family	SET
Epigenetic Regulators	SDG

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT1G43245.1	1	SET domain-containing protein
Prunus persica	Prupe.8G033600.1.p	1	SET domain-containing protein
Prunus persica	Prupe.8G033600.2.p	0.799	SET domain-containing protein
Pyrus communis	PCP010521.1	1	-
Pyrus x bretschneideri	Pbr030469.1	1	-
Rosa multiflora	Rmu_sc0000181.1_g000001.1	1	-
Rubus occidentalis	Ro02_G25952	1	-
Fragaria vesca	mrna08123.1	1	SET domain-containing protein
Vitis vinifera	GSVIVT01034549001	1	SET domain-containing protein
Populus trichocarpa	Potri.005G193500.1	1	SET domain-containing protein
Nicotiana benthamiana	Niben101Scf13188g00016.1	1	SET domain-containing protein LENGTH=558
Oryza sativa	LOC_Os04g34610.1	1	expressed protein
Zea mays	GRMZM2G401062_P01	1	-

Gene Ontology

GO term	Description	Category
GO:0005515	protein binding	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	1.31657
SRR5252888	dormant buds	no	dormant buds(0 month)	1.73204
SRR5252889	dormant buds	no	dormant buds(0 month)	1.64977
SRR5252886	dormant buds	no	dormant buds(1 months)	1.27124
SRR5252887	dormant buds	no	dormant buds(1 months)	1.92268
SRR5252884	dormant buds	no	dormant buds(2 months)	1.3278
SRR5252882	dormant buds	no	dormant buds(3 months)	0.49939
SRR5252883	dormant buds	no	dormant buds(3 months)	1.13369
SRR5252880	dormant buds	no	dormant buds(4 months)	1.24599
SRR5252881	dormant buds	no	dormant buds(4 months)	1.15249
SRR5252878	bud break	no	bud break	1.57198
SRR5252879	bud break	no	bud break	1.05507
SRR3744766	flower	no	mature	8.98953
SRR3744767	flower	no	mature	9.49301
SRR3744768	flower	no	mature	10.396
SRR6308190	stigmas	no	open flowers	2.6555
SRR6308181	styles	no	open flowers	2.0569
SRR6308188	filaments	no	open flowers	1.71398
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	4.6914
SRR6308192	pollen	no	open flowers	25.1355
SRR6308191	petals	no	open flowers	1.31954
SRR6308194	sepals	no	open flowers	2.20228
SRR6308193	receptacles	no	open flowers	2.20973
SRR6308189	ovaries	no	open flowers	1.79631
SRR3384922	fruit	no	1 week after full bloom	0.506454
SRR3384921	fruit	no	2 week after full bloom	0.801223
SRR3384920	fruit	no	3 week after full bloom	0.965409
SRR3384919	fruit	no	4 week after full bloom	0.308733
SRR3384923	fruit	no	5 week after full bloom	0.848185
SRR3384918	fruit	no	6 week after full bloom	1.08947
SRR3384917	fruit	no	8 week after full bloom	0.943746
SRR3384916	fruit	no	10 week after full bloom	0.987614
SRR3384915	fruit	no	12 week after full bloom	1.04765
SRR3384914	fruit	no	14 week after full bloom	0.859754
SRR3384913	fruit	no	16 week after full bloom	0.644411
SRR3384912	fruit	no	18 week after full bloom	1.0799
SRR3384911	fruit	no	19 week after full bloom	0.372872
SRR3384910	fruit	no	20 week after full bloom	0.908284
SRR768128	whole fruit	no	25 days post anthesis	1.9247
SRR768129	whole fruit	no	35 days post anthesis	0.515513
SRR768130	whole fruit	no	60 days post anthesis	1.03717
SRR768131	whole fruit	no	87 days post anthesis	0.520456
SRR7343308	immature fruit flesh	no	immature	1.38032
SRR7343309	immature fruit flesh	no	immature	0.917967
SRR6320494	ripe fruit flesh	no	mature	1.54479
SRR5405143	ripe fruit peel	no	mature	1.53867
SRR6320572	ripe fruit peel	no	mature	2.3038
SRR7403504	fruit	uninfected	mature	1.08244
SRR7403506	fruit	uninfected	mature	1.16631
SRR7403507	fruit	uninfected	mature	1.14042
SRR7403500	fruit	infected with penicillium expansum	mature	0.559523
SRR7403501	fruit	infected with penicillium expansum	mature	0.747288
SRR7403508	fruit	infected with penicillium expansum	mature	0.778142
SRR7403502	fruit	infected with penicillium expansum	mature	0.277669
SRR7403503	fruit	infected with penicillium expansum	mature	0.775336
SRR7403505	fruit	infected with penicillium expansum	mature	0.604009
SRR1613973	Central seeds	no	20DAPF	0.722217
SRR1613974	Central seeds	no	20DAPF	0.88032
SRR1613975	Central seeds	no	20DAPF	0.923542
SRR1613976	Lateral seeds	no	20DAPF	0.97716
SRR1613977	Lateral seeds	no	20DAPF	1.0543
SRR1613978	Lateral seeds	no	20DAPF	0.90346
SRR3744786	stem	no	mature	7.94759
SRR3744787	stem	no	mature	7.06739
SRR3744772	stem	no	mature	7.96304
SRX765691	seedling shoot apex	no	4-6 week old seedling	2.74242
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	2.0531
SRR1089478	leaf	Virus-free	plantlets	1.50063
SRR1089477	leaf	ASGV-infected	plantlets	2.50265
SRR767660	leaf	uninfected	fully developed	0.913551
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	1.60042
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	1.68622
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	1.50025
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0.873526
SRR6308182	young leaf	no	immature leaves	1.18982
SRR3744769	leaf	no	mature	10.1535
SRR3744770	leaf	no	mature	11.1059
SRR3744771	leaf	no	mature	10.8535
SRR5405145	leaf	no	mature	4.13618
SRR6320561	leaf	no	mature	1.77267