Gene detail

Detail information of MD05G1058800 Annotation

Gene ID	Annotation
MD05G1058800	Papain family cysteine protease

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD05G1058800	mRNA	Chr05	10285483	10288341	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT4G39090.1	1	RD19;RD19A\|RESPONSIVE TO DEHYDRATION 19;RESPONSIVE TO DEHYDRATION 19A
Pyrus communis	PCP028576.1	1	-
Rosa multiflora	Rmu_sc0006413.1_g000010.1	1	-
Rosa multiflora	Rmu_sc0012140.1_g000025.1	0.937	-
Rubus occidentalis	Ro02_G15473	1	-
Fragaria vesca	mrna01608.1	1	Papain family cysteine protease
Populus trichocarpa	Potri.004G160300.1	1	Papain family cysteine protease
Nicotiana benthamiana	Niben101Scf15022g00015.1	1	Cathepsin B-like cysteine proteinase
Nicotiana benthamiana	Niben101Scf00973g01002.1	0.877	Cathepsin B-like cysteine proteinase

Gene Ontology

GO term	Description	Category
GO:0006508	proteolysis	biological_process
GO:0008234	cysteine-type peptidase activity	molecular_function

KEGG

KO	Description	Enzyme
K01373	cathepsin F	EC:3.4.22.41

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08246.8	Inhibitor_I29	52	108	1.30E-12
PF00112.19	Peptidase_C1	135	358	3.80E-75

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	138.158
SRR5252888	dormant buds	no	dormant buds(0 month)	82.38
SRR5252889	dormant buds	no	dormant buds(0 month)	68.2745
SRR5252886	dormant buds	no	dormant buds(1 months)	75.6973
SRR5252887	dormant buds	no	dormant buds(1 months)	73.9573
SRR5252884	dormant buds	no	dormant buds(2 months)	85.8889
SRR5252882	dormant buds	no	dormant buds(3 months)	71.8017
SRR5252883	dormant buds	no	dormant buds(3 months)	124.403
SRR5252880	dormant buds	no	dormant buds(4 months)	72.0618
SRR5252881	dormant buds	no	dormant buds(4 months)	89.7181
SRR5252878	bud break	no	bud break	68.1618
SRR5252879	bud break	no	bud break	64.0071
SRR3744766	flower	no	mature	459.12
SRR3744767	flower	no	mature	428.933
SRR3744768	flower	no	mature	428.171
SRR6308190	stigmas	no	open flowers	319.288
SRR6308181	styles	no	open flowers	209.573
SRR6308188	filaments	no	open flowers	106.63
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	298.247
SRR6308192	pollen	no	open flowers	186.851
SRR6308191	petals	no	open flowers	130.533
SRR6308194	sepals	no	open flowers	126.59
SRR6308193	receptacles	no	open flowers	117.682
SRR6308189	ovaries	no	open flowers	142.719
SRR3384922	fruit	no	1 week after full bloom	163.744
SRR3384921	fruit	no	2 week after full bloom	190.802
SRR3384920	fruit	no	3 week after full bloom	231.845
SRR3384919	fruit	no	4 week after full bloom	217.146
SRR3384923	fruit	no	5 week after full bloom	279.812
SRR3384918	fruit	no	6 week after full bloom	264.163
SRR3384917	fruit	no	8 week after full bloom	271.772
SRR3384916	fruit	no	10 week after full bloom	263.386
SRR3384915	fruit	no	12 week after full bloom	321.511
SRR3384914	fruit	no	14 week after full bloom	243.017
SRR3384913	fruit	no	16 week after full bloom	268.082
SRR3384912	fruit	no	18 week after full bloom	273.227
SRR3384911	fruit	no	19 week after full bloom	350.934
SRR3384910	fruit	no	20 week after full bloom	430.086
SRR768128	whole fruit	no	25 days post anthesis	155.166
SRR768129	whole fruit	no	35 days post anthesis	235.215
SRR768130	whole fruit	no	60 days post anthesis	268.811
SRR768131	whole fruit	no	87 days post anthesis	236.887
SRR7343308	immature fruit flesh	no	immature	282.564
SRR7343309	immature fruit flesh	no	immature	299.2
SRR6320494	ripe fruit flesh	no	mature	225.677
SRR5405143	ripe fruit peel	no	mature	233.183
SRR6320572	ripe fruit peel	no	mature	416.27
SRR7403504	fruit	uninfected	mature	242.017
SRR7403506	fruit	uninfected	mature	251.163
SRR7403507	fruit	uninfected	mature	250.169
SRR7403500	fruit	infected with penicillium expansum	mature	104.296
SRR7403501	fruit	infected with penicillium expansum	mature	101.302
SRR7403508	fruit	infected with penicillium expansum	mature	107.292
SRR7403502	fruit	infected with penicillium expansum	mature	90.978
SRR7403503	fruit	infected with penicillium expansum	mature	99.4838
SRR7403505	fruit	infected with penicillium expansum	mature	91.6215
SRR1613973	Central seeds	no	20DAPF	122.639
SRR1613974	Central seeds	no	20DAPF	133.46
SRR1613975	Central seeds	no	20DAPF	143.756
SRR1613976	Lateral seeds	no	20DAPF	214.996
SRR1613977	Lateral seeds	no	20DAPF	202.762
SRR1613978	Lateral seeds	no	20DAPF	203.66
SRR3744786	stem	no	mature	260.899
SRR3744787	stem	no	mature	268.751
SRR3744772	stem	no	mature	254.051
SRX765691	seedling shoot apex	no	4-6 week old seedling	68.8669
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	92.1005
SRR1089478	leaf	Virus-free	plantlets	134.308
SRR1089477	leaf	ASGV-infected	plantlets	138.18
SRR767660	leaf	uninfected	fully developed	315.486
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	494.785
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	230.572
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	532.655
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	205.756
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	281.127
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	233.227
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	262.75
SRR6308182	young leaf	no	immature leaves	91.7026
SRR3744769	leaf	no	mature	337.509
SRR3744770	leaf	no	mature	333.693
SRR3744771	leaf	no	mature	328.85
SRR5405145	leaf	no	mature	198.224
SRR6320561	leaf	no	mature	208.186