Gene detail

Detail information of MD05G1060400 Annotation

Gene ID	Annotation
MD05G1060400	SUMO-activating enzyme 2

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD05G1060400	mRNA	Chr05	10485633	10492407	+

Sequences

CDS:

MD05G1060400

GTCAAAACCCTCAAAACCCCAATATTAAGGAGGAAAGGAAGAGAGAGAGGCCTCTCGCACAAACGACGGAACAGTAAAAAAGGGAGGTTTTTTTGGCTGTGAAATTTCCACTTTTTAGCTGTTTTTTTGGCGCCCTCAACCCTCAGCAGCCGTCCTTTCACGACCGCAACCCAACAGTCCAAGATCCCCCCACGTCCCCTGTTCGATTCTCCACAAACCCGTCTAAACTCTTAAGCCTACCCACCTATCTCTCCCTCTCTGGTATTTCACAAATTGCTTGCTTGCTCTGCTATTAAGTCCAATCCACTGTTGCGGTCCTCCCCTTTCTACCCCTAGCTTCTTCTTCTTCTGCAACTCTCATGGCTTCCCGGAAACACTTGGCCGCTGTTAAGGGCGCGAAAGTGCTCATGGTTGGGGCAGGTGGTATCGGCTGCGAGCTTCTCAAGACTCTCGCTCTCTCTGGCTTCCAAGATATTCATATTATCGACATGGACACTATAGAAGTGAGTAACCTCAACAGACAATTCCTCTTCCGACAATCACATGTTGGCCAATCCAAAGCCAAAGTTGCTCGGGAAGCTGTCTTAAAATTTAGGCCTGAGATAAGCATAACTTCATACCATGCAAATGTTAAGGATTCTGACTTCAATGTGGACTTCTTTAAGCAATTTAATGTGGTTTTGAATGGACTTGACAACTTAGATGCAAGGCGACATGTGAATCGCCTATGCTTGGGAGCTGATGTTCCCTTGATTGAAAGTGGGACGACTGGGTTCCTTGGACAGGTGACTGTACATGTGAAGGGAAGAACAGAGTGCTATGAGTGTCAACCAAAACCTGCTCCTAAAACTTATCCTGTCTGTACCATTACCAGTACTCCATCAAAGTTTGTTCACTGTATCGTATGGGCAAAGGAACTTCTTTTTGCAAAGTTGTTTGGGGACAAGAATCAGGCAAATGATTTGAATGTGCGTTCTAGTGATGGTGCTAGCTCATCAAAACAGGCTGAAGATGTATTTGAACATAGAGATGATGAAGACATTGAGCAGTATGGAAGGAGAATATATGATCATGTATTTGGTTATAATATTGAGCAAGCTTTGTCTAATGAGGAGACATGGAAGAACCGCAATAGACCAAAGCCTATGTATATTAGGGATGTCATGCTCAATGAGCTCGGTCAACAGAATGGAAGTGTGGAAAAGAATGGTGCAGCCAATGAAGTATATTCAGTATCTGCCATGGCATCTCTAGGAATGAAGAATCCACAGGATATATGGAGCCTTATGGAAAATTCCAGAGTCTTTCTTGAGGCTTTGAAACTATTTTTCATGAAAAGGCAGAAGGAAATTGGAAATCTCACCTTTGATAAAGATGATCAGCTAGCTGTGGAGTTTGTTACTGCTGCTGCAAATATACGGGCTGCTTCTTTTGGAATCCCGTTGCATAGCCTTTTTGAAGCTAAAGGGATTGCTGGTAATATTGTACATGCTGTTGCGACAACGAATGCTATTATTGCTGGGTTGATTGTCATTGAGGCAATCAAGGTGCTGCAAAATGATACAAAGAACTATAGGATGACATATTGTCTAGAACATCCAGCAAGAAAAATGTTGCTCATGCCAGTGGATCCATTTGAGCCTAACAAGTCTTGCTATGTCTGTTCAGAGACACCACTATCACTTGAGATCAATACTCACCGTACAAAGTTGCGGGATGTAGTTGAAAAGATTGTTAGAGCCACGCTCGGGATGGGCTTGCCACTCATTATGCATGGTTCAGCCCTTCTTTATGAAGTTGGTGATGACTTGGACGAAGACATGGTAGCAAATTATGCAGCAAACCTTGATAAGGTGCTGTCTGAGCTTCCTACACCAGTTACCAGTGGGACCATGCTGACAATTGAGGATTTTCTGCAAGAACTGTCGTGCAAGATCAATATTAAACACAGAGAGGAATTTGATGAAGAGAAAGAACCCGATGGAATGGTTCTATCTGGGTGGACTCAAGCTCCTGCAGTGGCACAGGATGACAAGAAGTCTACTGCAAATGCTGGAAGTTCATCAAGTGCATCATCATCTATGGAGCCTGAAAAGACTGATGACATTGAAACTACTCCTGGAAAGAAAAGAAAACTGTCTGAGGTTTCTGAGTCCGCGAATCCAGAATTGTCGAGTGTTGCTGGCAGTAGTACAAGAAATCCCGAGAAATTGGAACTGGTTGATGACGACGATGACCTTGTCATATTTGATAATTGGGATTCGGTCACGGACAAGAAGATAAAGTTGCAATAGTTATTCCGTGGATAACGTGGAGGCCTCAGTTCAGTTCTAATTTTGTACCATTAGTGAGAAGCACTCATTCTTTTTTGGGAGGTTGGCTCAGTTGTTGTTTGTTAGGTGGAGCCGGTACAAATTAAGCGGTCTATGCTTCCCTCTTTTTTTTTTCTTTTTTTTTTTTGGTTGAAGGTGTAATGTGTCGTCGTCTTCCTAACTTAGTAGACAGAATTTTAGCAGTGTAACTTGAAGAGAAAACCATAACCTCGAAAATGTACCTGAAATAACTAAACAAGTGACCGTGAGTTTCAAACTTCCTTTTCATTCCATCATGAATTTAGTTTCCACCATGGATTTG

Protein:

Gene family

Gene family	Subfamily
Ubiquitin Family	ThiF

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT2G21470.1	1	ATSAE2;EMB2764;SAE2\|SUMO-ACTIVATING ENZYME 2;EMBRYO DEFECTIVE 2764
Arabidopsis thaliana	AT2G21470.2	1	ATSAE2;EMB2764;SAE2\|SUMO-ACTIVATING ENZYME 2;EMBRYO DEFECTIVE 2764
Arabidopsis thaliana	AT2G21470.3	0.981	ATSAE2;EMB2764;SAE2\|SUMO-ACTIVATING ENZYME 2;EMBRYO DEFECTIVE 2764
Pyrus x bretschneideri	Pbr001228.1	1	-
Rosa multiflora	Rmu_sc0000776.1_g000024.1	1	-
Rubus occidentalis	Ro02_G16183	1	-
Fragaria vesca	mrna21856.1	1	SUMO-activating enzyme 2
Vitis vinifera	GSVIVT01023831001	1	SUMO-activating enzyme 2
Populus trichocarpa	Potri.004G158900.1	1	SUMO-activating enzyme 2
Nicotiana benthamiana	Niben101Scf04861g00027.1	1	SUMO-activating enzyme 2 LENGTH=700
Nicotiana benthamiana	Niben101Scf10889g00005.1	0.753	SUMO-activating enzyme 2 LENGTH=700
Oryza sativa	LOC_Os07g39780.3	1	"SUMO-activating enzyme subunit 2, putative, expressed"

Gene Ontology

GO term	Description	Category
GO:0008641	small protein activating enzyme activity	molecular_function
GO:0005524	ATP binding	molecular_function
GO:0006464	cellular protein modification process	biological_process

KEGG

KO	Description	Enzyme
K10685	ubiquitin-like 1-activating enzyme E1 B	EC:6.2.1.45

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00899.17	ThiF	5	408	1.10E-72
PF10585.5	UBA_e1_thiolCys	314	369	9.20E-06
PF14732.2	UAE_UbL	442	534	2.20E-21

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	4.62374
SRR5252888	dormant buds	no	dormant buds(0 month)	18.1104
SRR5252889	dormant buds	no	dormant buds(0 month)	17.1301
SRR5252886	dormant buds	no	dormant buds(1 months)	16.3441
SRR5252887	dormant buds	no	dormant buds(1 months)	17.7822
SRR5252884	dormant buds	no	dormant buds(2 months)	22.0217
SRR5252882	dormant buds	no	dormant buds(3 months)	20.1087
SRR5252883	dormant buds	no	dormant buds(3 months)	24.8214
SRR5252880	dormant buds	no	dormant buds(4 months)	20.8582
SRR5252881	dormant buds	no	dormant buds(4 months)	20.3399
SRR5252878	bud break	no	bud break	20.8409
SRR5252879	bud break	no	bud break	19.0769
SRR3744766	flower	no	mature	6.05882
SRR3744767	flower	no	mature	5.91378
SRR3744768	flower	no	mature	5.89433
SRR6308190	stigmas	no	open flowers	4.32399
SRR6308181	styles	no	open flowers	5.2669
SRR6308188	filaments	no	open flowers	4.76332
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	2.88392
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	5.7659
SRR6308194	sepals	no	open flowers	5.92595
SRR6308193	receptacles	no	open flowers	6.43704
SRR6308189	ovaries	no	open flowers	5.38008
SRR3384922	fruit	no	1 week after full bloom	4.44366
SRR3384921	fruit	no	2 week after full bloom	3.6743
SRR3384920	fruit	no	3 week after full bloom	2.70587
SRR3384919	fruit	no	4 week after full bloom	3.26064
SRR3384923	fruit	no	5 week after full bloom	2.60988
SRR3384918	fruit	no	6 week after full bloom	1.72594
SRR3384917	fruit	no	8 week after full bloom	1.70274
SRR3384916	fruit	no	10 week after full bloom	2.34688
SRR3384915	fruit	no	12 week after full bloom	2.55338
SRR3384914	fruit	no	14 week after full bloom	2.25973
SRR3384913	fruit	no	16 week after full bloom	1.96884
SRR3384912	fruit	no	18 week after full bloom	2.49776
SRR3384911	fruit	no	19 week after full bloom	1.83775
SRR3384910	fruit	no	20 week after full bloom	2.31253
SRR768128	whole fruit	no	25 days post anthesis	3.49767
SRR768129	whole fruit	no	35 days post anthesis	3.63665
SRR768130	whole fruit	no	60 days post anthesis	2.12374
SRR768131	whole fruit	no	87 days post anthesis	2.73302
SRR7343308	immature fruit flesh	no	immature	4.00793
SRR7343309	immature fruit flesh	no	immature	1.2719
SRR6320494	ripe fruit flesh	no	mature	2.45066
SRR5405143	ripe fruit peel	no	mature	3.95645
SRR6320572	ripe fruit peel	no	mature	2.89886
SRR7403504	fruit	uninfected	mature	2.76216
SRR7403506	fruit	uninfected	mature	2.93595
SRR7403507	fruit	uninfected	mature	3.27076
SRR7403500	fruit	infected with penicillium expansum	mature	4.87754
SRR7403501	fruit	infected with penicillium expansum	mature	5.92213
SRR7403508	fruit	infected with penicillium expansum	mature	5.21794
SRR7403502	fruit	infected with penicillium expansum	mature	5.13447
SRR7403503	fruit	infected with penicillium expansum	mature	4.54687
SRR7403505	fruit	infected with penicillium expansum	mature	5.41263
SRR1613973	Central seeds	no	20DAPF	5.57942
SRR1613974	Central seeds	no	20DAPF	5.74979
SRR1613975	Central seeds	no	20DAPF	5.04045
SRR1613976	Lateral seeds	no	20DAPF	5.99523
SRR1613977	Lateral seeds	no	20DAPF	5.39499
SRR1613978	Lateral seeds	no	20DAPF	5.91674
SRR3744786	stem	no	mature	9.41295
SRR3744787	stem	no	mature	8.70988
SRR3744772	stem	no	mature	9.22845
SRX765691	seedling shoot apex	no	4-6 week old seedling	9.58576
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	8.34115
SRR1089478	leaf	Virus-free	plantlets	4.99811
SRR1089477	leaf	ASGV-infected	plantlets	5.16931
SRR767660	leaf	uninfected	fully developed	3.26062
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	1.52933
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	3.50669
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	3.11963
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	6.06575
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	4.33052
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	5.1323
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	5.38844
SRR6308182	young leaf	no	immature leaves	7.63858
SRR3744769	leaf	no	mature	8.97203
SRR3744770	leaf	no	mature	9.08077
SRR3744771	leaf	no	mature	9.55617
SRR5405145	leaf	no	mature	6.5556
SRR6320561	leaf	no	mature	6.0193