Gene detail

Detail information of MD05G1066300 Annotation

Gene ID	Annotation
MD05G1066300	Alpha-helical ferredoxin

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0764	NADH dehydrogenase (ubiquinone) Fe-S protein 8 [EC:1.6.5.3 1.6.99.3] plasminogen activator inhibitor 1 RNA-binding protein electron transporter

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD05G1066300	mRNA	Chr05	12428611	12432706	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT1G16700.1	1	Alpha-helical ferredoxin
Arabidopsis thaliana	AT1G79010.1	1	Alpha-helical ferredoxin
Rosa multiflora	Rmu_sc0006951.1_g000002.1	1	-
Rubus occidentalis	Ro05_G20463	1	-
Fragaria vesca	mrna10884.1	1	Alpha-helical ferredoxin
Vitis vinifera	GSVIVT01031966001	1	Alpha-helical ferredoxin
Populus trichocarpa	Potri.009G116000.1	1	Alpha-helical ferredoxin
Nicotiana benthamiana	Niben101Scf06203g01010.1	1	NADH-quinone oxidoreductase subunit I
Nicotiana benthamiana	Niben101Scf00091g01023.1	0.773	NADH-quinone oxidoreductase subunit I
Oryza sativa	LOC_Os03g56300.1	1	"4Fe-4S binding domain containing protein, expressed"
Oryza sativa	LOC_Os10g21398.1	1	"NADPH-dependent oxidoreductase, putative, expressed"
Zea mays	GRMZM2G072806_P01	1	NADH-ubiquinone oxidoreductase 23 kDa subunit;

Gene Ontology

GO term	Description	Category
GO:0051536	iron-sulfur cluster binding	molecular_function
GO:0016020	membrane	cellular component
GO:0055114	oxidation-reduction process	biological_process
GO:0009055	electron carrier activity	molecular_function

KEGG

KO	Description	Enzyme
K03941	NADH dehydrogenase (ubiquinone) Fe-S protein 8	EC:1.6.5.3 1.6.99.3

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12838.3	Fer4_7	122	176	8.40E-13

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	32.9665
SRR5252888	dormant buds	no	dormant buds(0 month)	35.6926
SRR5252889	dormant buds	no	dormant buds(0 month)	41.3479
SRR5252886	dormant buds	no	dormant buds(1 months)	34.0052
SRR5252887	dormant buds	no	dormant buds(1 months)	47.2317
SRR5252884	dormant buds	no	dormant buds(2 months)	36.493
SRR5252882	dormant buds	no	dormant buds(3 months)	34.1503
SRR5252883	dormant buds	no	dormant buds(3 months)	54.0666
SRR5252880	dormant buds	no	dormant buds(4 months)	24.4536
SRR5252881	dormant buds	no	dormant buds(4 months)	30.7898
SRR5252878	bud break	no	bud break	16.2884
SRR5252879	bud break	no	bud break	18.3153
SRR3744766	flower	no	mature	25.1497
SRR3744767	flower	no	mature	24.5345
SRR3744768	flower	no	mature	25.9027
SRR6308190	stigmas	no	open flowers	47.842
SRR6308181	styles	no	open flowers	52.3076
SRR6308188	filaments	no	open flowers	64.6542
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	72.2029
SRR6308192	pollen	no	open flowers	162.336
SRR6308191	petals	no	open flowers	63.1789
SRR6308194	sepals	no	open flowers	50.3863
SRR6308193	receptacles	no	open flowers	63.6686
SRR6308189	ovaries	no	open flowers	44.7736
SRR3384922	fruit	no	1 week after full bloom	49.9672
SRR3384921	fruit	no	2 week after full bloom	41.981
SRR3384920	fruit	no	3 week after full bloom	27.8775
SRR3384919	fruit	no	4 week after full bloom	41.7251
SRR3384923	fruit	no	5 week after full bloom	36.1384
SRR3384918	fruit	no	6 week after full bloom	32.5445
SRR3384917	fruit	no	8 week after full bloom	28.2687
SRR3384916	fruit	no	10 week after full bloom	25.8192
SRR3384915	fruit	no	12 week after full bloom	18.018
SRR3384914	fruit	no	14 week after full bloom	22.7964
SRR3384913	fruit	no	16 week after full bloom	41.1649
SRR3384912	fruit	no	18 week after full bloom	27.9797
SRR3384911	fruit	no	19 week after full bloom	51.9945
SRR3384910	fruit	no	20 week after full bloom	38.7404
SRR768128	whole fruit	no	25 days post anthesis	18.9532
SRR768129	whole fruit	no	35 days post anthesis	40.7754
SRR768130	whole fruit	no	60 days post anthesis	22.9994
SRR768131	whole fruit	no	87 days post anthesis	22.8039
SRR7343308	immature fruit flesh	no	immature	24.5793
SRR7343309	immature fruit flesh	no	immature	29.6148
SRR6320494	ripe fruit flesh	no	mature	23.4223
SRR5405143	ripe fruit peel	no	mature	19.2024
SRR6320572	ripe fruit peel	no	mature	10.111
SRR7403504	fruit	uninfected	mature	27.6332
SRR7403506	fruit	uninfected	mature	25.4523
SRR7403507	fruit	uninfected	mature	24.8844
SRR7403500	fruit	infected with penicillium expansum	mature	87.3473
SRR7403501	fruit	infected with penicillium expansum	mature	90.8875
SRR7403508	fruit	infected with penicillium expansum	mature	87.7266
SRR7403502	fruit	infected with penicillium expansum	mature	78.6197
SRR7403503	fruit	infected with penicillium expansum	mature	74.4265
SRR7403505	fruit	infected with penicillium expansum	mature	81.2363
SRR1613973	Central seeds	no	20DAPF	59.211
SRR1613974	Central seeds	no	20DAPF	58.0506
SRR1613975	Central seeds	no	20DAPF	61.0401
SRR1613976	Lateral seeds	no	20DAPF	56.586
SRR1613977	Lateral seeds	no	20DAPF	62.4301
SRR1613978	Lateral seeds	no	20DAPF	59.4463
SRR3744786	stem	no	mature	17.9715
SRR3744787	stem	no	mature	19.1683
SRR3744772	stem	no	mature	18.3307
SRX765691	seedling shoot apex	no	4-6 week old seedling	29.9818
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	14.7714
SRR1089478	leaf	Virus-free	plantlets	25.9744
SRR1089477	leaf	ASGV-infected	plantlets	24.6254
SRR767660	leaf	uninfected	fully developed	31.3529
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	22.4993
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	28.8052
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	38.2961
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	44.3344
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	19.9662
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	28.0757
SRR6308182	young leaf	no	immature leaves	36.7643
SRR3744769	leaf	no	mature	18.4103
SRR3744770	leaf	no	mature	16.9286
SRR3744771	leaf	no	mature	16.7606
SRR5405145	leaf	no	mature	17.6446
SRR6320561	leaf	no	mature	17.0706