Gene detail

Detail information of MD05G1067900 Annotation

Gene ID	Annotation
MD05G1067900	DNA-binding family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD05G1067900	mRNA	Chr05	12764381	12769823	-

Sequences

CDS:

MD05G1067900

ATGGAAGAAAAACGCCGCGACGCTGCCGGAACTCAGCCGCCGTCAAATGCCGACTCTCCAACCGCCGAGCCGTCTTCTACTCGGCGTCGTGGCGGAGCCCAAAAGCGAAAGGCAAGCAGCCTCGGCGGCTCAACCTCTTCATCGACGCCATCCAAACGTTTCGCTCGCGAGAAGGCTTTGCTTTCTCACACTTCGATCCACAACGGCCCGTTGACCCGGGCCCGTCAGGGCCCTAGCAGCCTCGCTTCGGCTTCATCAGCTGGGGCTGCTGCGAAGCCGGCGGTGCAAGCCAAGCGGCCTGACCCGGTGGGGGAGGCGGTGGCTGAGCTGGTGAAACGGGAGATCGATTTGGAGGCTCTGGAGGCTTCTATGGAGGCTGGGTTTGAATCCATTAGATCTCGCAGTGCCAATGCTCATGTTGTTCCTAGTCATTGCGGTTGGTTTTCTTGGACAAAGGTTCACTCCATTGAGGAGCAAATGTTGCCGTCTTTCTTTAATGGGAAGTCTGTGACTCGGACTCCTGACGTATACTTAGAGATACGTAATTGCATCATGAAGAAATTCAACGCAAATCCGGGCACATTTATTGAATTAAAGGACTTGTTGGAGCTTGAAGTTGGAGAATTTGATGCTAGACAAGAAATAATGGAATTTTTGGACCATTGGGGTTTGATTAATTTCCACCCATTCCCACCAACAGGTTCTTCTGTGGCCAGCATCGACGGTGATGGAGTGGTTGAAAAGGATTCTTTGGTTGATAAGTTGTATCACTTTGAAGCATTACAATCACGCTCATCAGTTGTTCCCAAGACTAATATAACGACCCCAACAGTGCTATCTGGGTTGTTTCCCGATTCTGCAATTGCTGAAGAGTTGGTTAGGCCTGAAGGGCCAGCTGTTGAGTACCATTGCAACTCTTGTTCAGCTGATTGCTCACGCAAGCGCTACCATTGCCAGAAGCAGGCAGATTTTGATCTATGCACTGATTGCTTTAATAATGGGAAATTCGACTCTGGCATGTCTTCGTCAGATTTCATTCTTATGGAGCCTGCTGAAGTTCCAAGTGTAAGTGGTGGGAACTGGACTGATCAGGAGACTCTCCTTCTCCTTGAAGCATTAGAACTTTATAAAGAAAACTGGAATGAGATTGCTGAACATGTTGCAACAAAAACAAAAGCTCAATGTATACTGCACTTTGTTCAAATGCCAATTGAGGACACTTTTCTTGATTATGACGATGGTTTTGATGGTAGTGCCAAAGAGACTGCATGTCCAACTTCAACCGGAAATGATTTATCGGCCCCCAAAGGTGCCTCTGAAGCAACAGAGAATAAGACTGCTGTTAGTGCGAGTGACCCCCAAACTTTCCCGATTGAAACTTCAAAAGAAGTGACTGAAGTAAACATTGGACAGGATACTTCAAAGCCAGAAGATTTAAATGAAGTCAAAGACGGTCAGGAAACTTCAAAATTGGAAGATACCAGTGAATTGAAAGTTGATCAAGAAACAGATGAGAATTTTGCACTAAAGGCTCTTAAAGAAGCATTCGAAGTTGTTGGTTATTCTCCAACACCTGAAGGTCAACTTTCATTTACAAAAGTGGGAAACCCTGCCATGGCATTGGCAGCATTCCTAGCACGTTTGGTGGGACCTGATGCTGCTATTGCTTCAGCACATAATTCTTTGAAATATATATCTGCCAGTTGTGGTATTGCGCTGGCTGCAAGGCATTGCTTTATTTTGGAAGATCCACCGAATGGCAGTAAGGAACATGCTGGTCCTGATAGTGTTTCTGCTGAAGTGGAAGCACAGAAAGACAAAGTCAATGAAGACAAAAGCCAGAAAGAGGATAACTCCACCTCAGGTTTGGAAGATAAAGATTCATCAAATAATAGCAGTGACAAGAAACTTGAAAAATCTTCTTCTGAAGAAAAGTCGCAATCTGCAAAAGAACAAGATGGCGTAGTTTCTGATGAGGAAGTAGGAACTGAAAATTTGAAGAACTCAGACAAGTTAGAGTTTCCAAGGGTTGAATCACCAACTACTGTGGAGGACACAACCGATTCAAAAGTGGAGACAGGGCATCAAACAAGTTCTGAGAAGGAATCAGGACGAGCAGGAAAGCCTTCTGAACCTACAGAGCCAGTAACTGATGTGGATATGTCTGATTCAGCTCCCCCTACAAAAAATGAGATTCAACAGCCAATTACGTCGAATTCAGTAGAGGAACCTCCTCAATCTAAAGAGGCAACAAAAGATGTAGATGTATCTAATTCTCTGGCTACAGAAATAAATGGACCTCAACCAGTGGTTACTGCCAAATCAGAAGAACCGCCTGAACCTACAGAGGTACCAAAGGATGTGGATATGGTGTGTGATTCTCAGACCCCACAAAAGGATGAGCCTCAGCAACCAGTTACATCAAATTCAGTGGTTGAAAAGGAAGCAAGTGACGATCAAACTAAAGATGGTAAAATAGAAAAACATGACAGTATGGAGACAAAGGTGGGTGAGAAAATTGATAAACTAAAGCTTGCTGCAGTTTCTGCAGTGTCAGCGGCTGCAGTGAAGGCAAAGCTTCTAGCAGAACAGGAAGAAGATCAAACCCGACAACTTGCAGCAATGTTGGTGGAGAAGCAGTTGCATAAGTTGGACGCCAAATTAGGATTCTTTAACGAGATGGAACATGTTGTAATGAGGGTAAGAGAGCAATTGGACAGGTCAAGACAGAAGCTCTACCATGAGCGGGCACAGATAATTGCATCTCGCCTTGGTGTACCAGGTTCATCTAGAGGCATGCCATCATCAATTCCTGCCAATAGAATGGCCATGAATATTGCAAACTCAGTTCCAAGGCCCACGCTAGGCATGACTTCCCAAAGGCCACCTATGTCAAGACCGATGGGGGCAGCTGCCCCGACTCCGTCAAACCAATTTTCAGCCACAACATTGGCAGGAAGTTCAATATGGCCTCCCAGAAAGGACAAACTTTCATCAGTTGGGTCCAAGTAAACACCTGAGAACTTGTGAATAGATATTAATTATTCTTCTGCAGCCATCATCAATTATCTTTTGTACCAAGAGCGAGCTAGAGATGGGCAGATTGGTGGTTGCTCTTCTGCTACACTGAAACAGCCTCTCCCCATGCCTGCCGATACTCCCATTTACAAAACAGACGAGGGCCTATCGGGGTAATTTTCAGTAATCCACTTTCTTCTGTTTTGGATATTTCAACTCTAACCATGGAAACCGTACGAGGTGACAAGCTAAGCAAAGAAAAAAAAAAAAAAGGATTCCACTGACAGCCCTAAAATCTTACTCAGGTAAACTGCCAAATTTGAAATTCTATCAGTGAGCCTTATGTAATTGAGTTTCTAACAATTTGGTGAATGCGTTGCAAAGTTTGTTTAATATCTTATGGCTTGACAGCGTTTGACTTGTTTATTGTAATATGGAGACCAAAATATGCATTTGCAGAGTTTGTTATCTAC

Protein:

Gene family

Gene family	Subfamily
Epigenetic Regulators	CHB

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT4G34430.3	1	ATSWI3D;CHB3\|SWITCH/SUCROSE NONFERMENTING 3D;
Arabidopsis thaliana	AT4G34430.1	0.995	ATSWI3D;CHB3\|SWITCH/SUCROSE NONFERMENTING 3D;
Arabidopsis thaliana	AT4G34430.2	0.995	ATSWI3D;CHB3\|SWITCH/SUCROSE NONFERMENTING 3D;
Arabidopsis thaliana	AT4G34430.4	0.992	ATSWI3D;CHB3\|SWITCH/SUCROSE NONFERMENTING 3D;
Pyrus communis	PCP009035.1	1	-
Pyrus x bretschneideri	Pbr039701.1	1	-
Vitis vinifera	GSVIVT01031951001	1	DNA-binding family protein
Solanum lycopersicum	Solyc01g109510.2.1	1	DNA-binding family protein
Populus trichocarpa	Potri.009G114900.1	1	DNA-binding family protein
Populus trichocarpa	Potri.004G153300.1	0.623	DNA-binding family protein
Nicotiana benthamiana	Niben101Scf04778g00001.1	1	SWI/SNF complex subunit SWI3D
Oryza sativa	LOC_Os03g51220.1	1	"SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C member, putative, expressed"
Zea mays	GRMZM2G047038_P01	1	-

Gene Ontology

GO term	Description	Category
GO:0003682	chromatin binding	molecular_function
GO:0005515	protein binding	molecular_function
GO:0003677	DNA binding	molecular_function
GO:0008270	zinc ion binding	molecular_function

KEGG

KO	Description	Enzyme
K11649	SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04433.13	SWIRM	141	227	2.60E-21
PF00569.13	ZZ	301	336	1.40E-08
PF00249.27	Myb_DNA-binding	359	401	5.70E-11

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	4.29481
SRR5252888	dormant buds	no	dormant buds(0 month)	14.5896
SRR5252889	dormant buds	no	dormant buds(0 month)	13.6671
SRR5252886	dormant buds	no	dormant buds(1 months)	12.5271
SRR5252887	dormant buds	no	dormant buds(1 months)	12.1284
SRR5252884	dormant buds	no	dormant buds(2 months)	14.9515
SRR5252882	dormant buds	no	dormant buds(3 months)	11.977
SRR5252883	dormant buds	no	dormant buds(3 months)	14.8547
SRR5252880	dormant buds	no	dormant buds(4 months)	16.6663
SRR5252881	dormant buds	no	dormant buds(4 months)	18.3371
SRR5252878	bud break	no	bud break	13.9867
SRR5252879	bud break	no	bud break	12.1019
SRR3744766	flower	no	mature	8.45706
SRR3744767	flower	no	mature	8.74482
SRR3744768	flower	no	mature	7.84161
SRR6308190	stigmas	no	open flowers	4.13897
SRR6308181	styles	no	open flowers	3.12823
SRR6308188	filaments	no	open flowers	3.92892
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	3.64755
SRR6308192	pollen	no	open flowers	6.49667
SRR6308191	petals	no	open flowers	2.76074
SRR6308194	sepals	no	open flowers	4.30522
SRR6308193	receptacles	no	open flowers	4.50082
SRR6308189	ovaries	no	open flowers	4.77167
SRR3384922	fruit	no	1 week after full bloom	4.07892
SRR3384921	fruit	no	2 week after full bloom	4.29185
SRR3384920	fruit	no	3 week after full bloom	2.97546
SRR3384919	fruit	no	4 week after full bloom	3.69193
SRR3384923	fruit	no	5 week after full bloom	3.58732
SRR3384918	fruit	no	6 week after full bloom	4.26957
SRR3384917	fruit	no	8 week after full bloom	4.60012
SRR3384916	fruit	no	10 week after full bloom	5.11939
SRR3384915	fruit	no	12 week after full bloom	4.80806
SRR3384914	fruit	no	14 week after full bloom	5.60032
SRR3384913	fruit	no	16 week after full bloom	4.7116
SRR3384912	fruit	no	18 week after full bloom	4.90165
SRR3384911	fruit	no	19 week after full bloom	4.5801
SRR3384910	fruit	no	20 week after full bloom	5.61631
SRR768128	whole fruit	no	25 days post anthesis	3.9318
SRR768129	whole fruit	no	35 days post anthesis	3.8044
SRR768130	whole fruit	no	60 days post anthesis	3.74607
SRR768131	whole fruit	no	87 days post anthesis	6.21096
SRR7343308	immature fruit flesh	no	immature	9.28001
SRR7343309	immature fruit flesh	no	immature	8.31507
SRR6320494	ripe fruit flesh	no	mature	7.11924
SRR5405143	ripe fruit peel	no	mature	9.20357
SRR6320572	ripe fruit peel	no	mature	4.97356
SRR7403504	fruit	uninfected	mature	5.23475
SRR7403506	fruit	uninfected	mature	6.01176
SRR7403507	fruit	uninfected	mature	6.26359
SRR7403500	fruit	infected with penicillium expansum	mature	0.884493
SRR7403501	fruit	infected with penicillium expansum	mature	1.02089
SRR7403508	fruit	infected with penicillium expansum	mature	0.876129
SRR7403502	fruit	infected with penicillium expansum	mature	1.19218
SRR7403503	fruit	infected with penicillium expansum	mature	1.33157
SRR7403505	fruit	infected with penicillium expansum	mature	1.30573
SRR1613973	Central seeds	no	20DAPF	4.50716
SRR1613974	Central seeds	no	20DAPF	5.02482
SRR1613975	Central seeds	no	20DAPF	4.52251
SRR1613976	Lateral seeds	no	20DAPF	4.94469
SRR1613977	Lateral seeds	no	20DAPF	4.45487
SRR1613978	Lateral seeds	no	20DAPF	4.79069
SRR3744786	stem	no	mature	13.7129
SRR3744787	stem	no	mature	12.8513
SRR3744772	stem	no	mature	13.0529
SRX765691	seedling shoot apex	no	4-6 week old seedling	9.33216
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	6.62099
SRR1089478	leaf	Virus-free	plantlets	7.65401
SRR1089477	leaf	ASGV-infected	plantlets	9.72462
SRR767660	leaf	uninfected	fully developed	3.48248
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	16.0045
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	3.89485
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0.576641
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0.990538
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	2.30694
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	2.67501
SRR6308182	young leaf	no	immature leaves	5.51795
SRR3744769	leaf	no	mature	12.1765
SRR3744770	leaf	no	mature	10.7817
SRR3744771	leaf	no	mature	11.4635
SRR5405145	leaf	no	mature	5.85865
SRR6320561	leaf	no	mature	4.74351