Gene detail

Detail information of MD05G1095900 Annotation

Gene ID	Annotation
MD05G1095900	RING/U-box superfamily protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD05G1095900	mRNA	Chr05	20196048	20197865	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
Ubiquitin Family	RING

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT1G49850.1	1	RING/U-box superfamily protein
Pyrus communis	PCP037271.1	1	-
Pyrus x bretschneideri	Pbr025772.1	1	-
Rosa multiflora	Rmu_sc0001716.1_g000017.1	1	-
Fragaria vesca	mrna25584.1	1	RING/U-box superfamily protein
Vitis vinifera	GSVIVT01037874001	1	RING/U-box superfamily protein
Populus trichocarpa	Potri.009G091200.1	1	RING/U-box superfamily protein
Populus trichocarpa	Potri.001G297000.1	0.674	RING/U-box superfamily protein
Nicotiana benthamiana	Niben101Scf05749g02030.1	1	RING finger protein 150
Nicotiana benthamiana	Niben101Scf06823g02001.1	0.684	RING finger protein 150
Oryza sativa	LOC_Os03g10890.1	1	"zinc finger, C3HC4 type domain containing protein, expressed"
Oryza sativa	LOC_Os12g39110.1	1	"zinc finger, C3HC4 type domain containing protein, expressed"
Zea mays	GRMZM5G863344_P01	1	Putative RING zinc finger domain superfamily protein;
Zea mays	GRMZM2G004422_P01	0.823	-

Gene Ontology

GO term	Description	Category
GO:0008270	zinc ion binding	molecular_function
GO:0005515	protein binding	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13639.2	zf-RING_2	219	261	9.10E-13

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	6.04242
SRR5252888	dormant buds	no	dormant buds(0 month)	2.70528
SRR5252889	dormant buds	no	dormant buds(0 month)	3.48213
SRR5252886	dormant buds	no	dormant buds(1 months)	3.2456
SRR5252887	dormant buds	no	dormant buds(1 months)	1.92763
SRR5252884	dormant buds	no	dormant buds(2 months)	2.9164
SRR5252882	dormant buds	no	dormant buds(3 months)	3.08749
SRR5252883	dormant buds	no	dormant buds(3 months)	4.86944
SRR5252880	dormant buds	no	dormant buds(4 months)	2.43263
SRR5252881	dormant buds	no	dormant buds(4 months)	4.77021
SRR5252878	bud break	no	bud break	3.71523
SRR5252879	bud break	no	bud break	1.52253
SRR3744766	flower	no	mature	6.89782
SRR3744767	flower	no	mature	6.89092
SRR3744768	flower	no	mature	7.59913
SRR6308190	stigmas	no	open flowers	7.16852
SRR6308181	styles	no	open flowers	7.03615
SRR6308188	filaments	no	open flowers	5.29605
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	4.2587
SRR6308192	pollen	no	open flowers	3.88844
SRR6308191	petals	no	open flowers	3.81271
SRR6308194	sepals	no	open flowers	4.24325
SRR6308193	receptacles	no	open flowers	6.43974
SRR6308189	ovaries	no	open flowers	7.0038
SRR3384922	fruit	no	1 week after full bloom	8.8243
SRR3384921	fruit	no	2 week after full bloom	7.49319
SRR3384920	fruit	no	3 week after full bloom	9.64306
SRR3384919	fruit	no	4 week after full bloom	10.9852
SRR3384923	fruit	no	5 week after full bloom	8.72696
SRR3384918	fruit	no	6 week after full bloom	10.2113
SRR3384917	fruit	no	8 week after full bloom	12.3878
SRR3384916	fruit	no	10 week after full bloom	10.5068
SRR3384915	fruit	no	12 week after full bloom	10.3859
SRR3384914	fruit	no	14 week after full bloom	8.85187
SRR3384913	fruit	no	16 week after full bloom	9.07783
SRR3384912	fruit	no	18 week after full bloom	10.6278
SRR3384911	fruit	no	19 week after full bloom	8.89888
SRR3384910	fruit	no	20 week after full bloom	7.22094
SRR768128	whole fruit	no	25 days post anthesis	5.66585
SRR768129	whole fruit	no	35 days post anthesis	5.2184
SRR768130	whole fruit	no	60 days post anthesis	9.92691
SRR768131	whole fruit	no	87 days post anthesis	5.3191
SRR7343308	immature fruit flesh	no	immature	7.19602
SRR7343309	immature fruit flesh	no	immature	9.42986
SRR6320494	ripe fruit flesh	no	mature	11.9896
SRR5405143	ripe fruit peel	no	mature	8.055
SRR6320572	ripe fruit peel	no	mature	12.557
SRR7403504	fruit	uninfected	mature	12.7804
SRR7403506	fruit	uninfected	mature	11.5847
SRR7403507	fruit	uninfected	mature	9.99875
SRR7403500	fruit	infected with penicillium expansum	mature	13.954
SRR7403501	fruit	infected with penicillium expansum	mature	17.3101
SRR7403508	fruit	infected with penicillium expansum	mature	14.1114
SRR7403502	fruit	infected with penicillium expansum	mature	10.1888
SRR7403503	fruit	infected with penicillium expansum	mature	11.1787
SRR7403505	fruit	infected with penicillium expansum	mature	9.59569
SRR1613973	Central seeds	no	20DAPF	9.86575
SRR1613974	Central seeds	no	20DAPF	10.3225
SRR1613975	Central seeds	no	20DAPF	11.4394
SRR1613976	Lateral seeds	no	20DAPF	10.7895
SRR1613977	Lateral seeds	no	20DAPF	11.0773
SRR1613978	Lateral seeds	no	20DAPF	10.4314
SRR3744786	stem	no	mature	14.0893
SRR3744787	stem	no	mature	13.3871
SRR3744772	stem	no	mature	12.271
SRX765691	seedling shoot apex	no	4-6 week old seedling	5.87194
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	5.26724
SRR1089478	leaf	Virus-free	plantlets	7.87006
SRR1089477	leaf	ASGV-infected	plantlets	6.55692
SRR767660	leaf	uninfected	fully developed	7.09248
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	4.5764
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	30.5453
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	5.53446
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	11.3161
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	6.01322
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	7.16029
SRR6308182	young leaf	no	immature leaves	6.23166
SRR3744769	leaf	no	mature	12.5742
SRR3744770	leaf	no	mature	10.5801
SRR3744771	leaf	no	mature	11.3344
SRR5405145	leaf	no	mature	8.83931
SRR6320561	leaf	no	mature	7.23746