Gene detail

Detail information of MD05G1121200 Annotation

Gene ID	Annotation
MD05G1121200	ubiquitin-conjugating enzyme 10

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD05G1121200	mRNA	Chr05	24390120	24391644	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
Ubiquitin Family	UBC

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Prunus persica	Prupe.8G165100.1.p	1	ubiquitin-conjugating enzyme 28
Pyrus x bretschneideri	Pbr020740.1	1	-
Pyrus x bretschneideri	Pbr020719.1	1	-
Rosa multiflora	Rmu_ssc0000303.1_g000012.1	1	-
Vitis vinifera	GSVIVT01024027001	1	ubiquitin-conjugating enzyme 28
Populus trichocarpa	Potri.004G175000.1	1	ubiquitin-conjugating enzyme 10

Gene Ontology

GO term	Description	Category
GO:0016881	acid-amino acid ligase activity	molecular_function

KEGG

KO	Description	Enzyme
K06689	ubiquitin-conjugating enzyme E2 D	EC:2.3.2.23

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00179.22	UQ_con	5	141	2.60E-52

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	11.7624
SRR5252888	dormant buds	no	dormant buds(0 month)	0.387778
SRR5252889	dormant buds	no	dormant buds(0 month)	0.7487
SRR5252886	dormant buds	no	dormant buds(1 months)	0.328397
SRR5252887	dormant buds	no	dormant buds(1 months)	1.39608
SRR5252884	dormant buds	no	dormant buds(2 months)	1.11477
SRR5252882	dormant buds	no	dormant buds(3 months)	1.39757
SRR5252883	dormant buds	no	dormant buds(3 months)	2.43663
SRR5252880	dormant buds	no	dormant buds(4 months)	0.557915
SRR5252881	dormant buds	no	dormant buds(4 months)	0.619262
SRR5252878	bud break	no	bud break	1.1114
SRR5252879	bud break	no	bud break	1.69458
SRR3744766	flower	no	mature	1.14662
SRR3744767	flower	no	mature	1.06344
SRR3744768	flower	no	mature	1.46771
SRR6308190	stigmas	no	open flowers	1.51367
SRR6308181	styles	no	open flowers	1.29612
SRR6308188	filaments	no	open flowers	2.24154
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	1.72176
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	10.7189
SRR6308194	sepals	no	open flowers	11.7795
SRR6308193	receptacles	no	open flowers	3.86666
SRR6308189	ovaries	no	open flowers	2.98767
SRR3384922	fruit	no	1 week after full bloom	5.23513
SRR3384921	fruit	no	2 week after full bloom	4.39169
SRR3384920	fruit	no	3 week after full bloom	2.7443
SRR3384919	fruit	no	4 week after full bloom	3.68774
SRR3384923	fruit	no	5 week after full bloom	6.24687
SRR3384918	fruit	no	6 week after full bloom	5.73404
SRR3384917	fruit	no	8 week after full bloom	8.98304
SRR3384916	fruit	no	10 week after full bloom	7.66539
SRR3384915	fruit	no	12 week after full bloom	8.66351
SRR3384914	fruit	no	14 week after full bloom	8.27108
SRR3384913	fruit	no	16 week after full bloom	10.0512
SRR3384912	fruit	no	18 week after full bloom	7.11069
SRR3384911	fruit	no	19 week after full bloom	4.87142
SRR3384910	fruit	no	20 week after full bloom	3.70521
SRR768128	whole fruit	no	25 days post anthesis	6.10414
SRR768129	whole fruit	no	35 days post anthesis	14.2659
SRR768130	whole fruit	no	60 days post anthesis	3.74621
SRR768131	whole fruit	no	87 days post anthesis	3.47053
SRR7343308	immature fruit flesh	no	immature	0.775145
SRR7343309	immature fruit flesh	no	immature	1.54983
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0.434002
SRR7403506	fruit	uninfected	mature	0.534869
SRR7403507	fruit	uninfected	mature	0.362895
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0.277429
SRR7403508	fruit	infected with penicillium expansum	mature	0.399993
SRR7403502	fruit	infected with penicillium expansum	mature	0.154627
SRR7403503	fruit	infected with penicillium expansum	mature	0.172705
SRR7403505	fruit	infected with penicillium expansum	mature	0
SRR1613973	Central seeds	no	20DAPF	3.78618
SRR1613974	Central seeds	no	20DAPF	2.76045
SRR1613975	Central seeds	no	20DAPF	2.81081
SRR1613976	Lateral seeds	no	20DAPF	3.41147
SRR1613977	Lateral seeds	no	20DAPF	3.82662
SRR1613978	Lateral seeds	no	20DAPF	3.70348
SRR3744786	stem	no	mature	4.22361
SRR3744787	stem	no	mature	5.97123
SRR3744772	stem	no	mature	6.13931
SRX765691	seedling shoot apex	no	4-6 week old seedling	2.0576
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	2.96824
SRR1089478	leaf	Virus-free	plantlets	15.6753
SRR1089477	leaf	ASGV-infected	plantlets	14.0892
SRR767660	leaf	uninfected	fully developed	23.4339
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	16.7232
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	22.7974
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	10.7352
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	15.8201
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	10.2863
SRR6308182	young leaf	no	immature leaves	2.31747
SRR3744769	leaf	no	mature	2.90374
SRR3744770	leaf	no	mature	2.82457
SRR3744771	leaf	no	mature	3.59318
SRR5405145	leaf	no	mature	15.1601
SRR6320561	leaf	no	mature	12.9243