Gene detail

Detail information of MD05G1122100 Annotation

Gene ID	Annotation
MD05G1122100	hydroxypyruvate reductase

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD05G1122100	mRNA	Chr05	24471991	24475932	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT1G68010.1	1	ATHPR1;HPR\|hydroxypyruvate reductase
Arabidopsis thaliana	AT1G68010.2	0.933	ATHPR1;HPR\|hydroxypyruvate reductase
Prunus persica	Prupe.8G166000.1.p	1	hydroxypyruvate reductase
Prunus persica	Prupe.8G166000.2.p	0.87	hydroxypyruvate reductase
Pyrus communis	PCP022967.1	1	-
Pyrus x bretschneideri	Pbr027407.1	1	-
Rosa multiflora	Rmu_sc0000144.1_g000017.1	1	-
Rubus occidentalis	Ro05_G21482	1	-
Fragaria vesca	mrna02041.1	1	hydroxypyruvate reductase
Vitis vinifera	GSVIVT01024012001	1	hydroxypyruvate reductase
Solanum lycopersicum	Solyc01g111630.2.1	1	hydroxypyruvate reductase
Populus trichocarpa	Potri.004G175800.1	1	hydroxypyruvate reductase
Nicotiana benthamiana	Niben101Scf01718g01001.1	1	Glyoxylate/hydroxypyruvate reductase B
Oryza sativa	LOC_Os02g01150.2	1	"erythronate-4-phosphate dehydrogenase domain containing protein, expressed"
Zea mays	GRMZM2G074282_P01	1	hydroxypyruvate reductase

Gene Ontology

GO term	Description	Category
GO:0055114	oxidation-reduction process	biological_process
GO:0051287	NAD binding	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00389.26	2-Hacid_dh	31	346	5.10E-18
PF02826.15	2-Hacid_dh_C	130	322	2.40E-45

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	487.103
SRR5252888	dormant buds	no	dormant buds(0 month)	11.2312
SRR5252889	dormant buds	no	dormant buds(0 month)	12.9099
SRR5252886	dormant buds	no	dormant buds(1 months)	9.29013
SRR5252887	dormant buds	no	dormant buds(1 months)	4.11399
SRR5252884	dormant buds	no	dormant buds(2 months)	12.4831
SRR5252882	dormant buds	no	dormant buds(3 months)	18.7327
SRR5252883	dormant buds	no	dormant buds(3 months)	24.8232
SRR5252880	dormant buds	no	dormant buds(4 months)	31.1903
SRR5252881	dormant buds	no	dormant buds(4 months)	30.4489
SRR5252878	bud break	no	bud break	40.7046
SRR5252879	bud break	no	bud break	29.4687
SRR3744766	flower	no	mature	27.3434
SRR3744767	flower	no	mature	26.8466
SRR3744768	flower	no	mature	25.9743
SRR6308190	stigmas	no	open flowers	39.576
SRR6308181	styles	no	open flowers	32.7611
SRR6308188	filaments	no	open flowers	12.1941
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	2.69765
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	9.51699
SRR6308194	sepals	no	open flowers	46.1955
SRR6308193	receptacles	no	open flowers	19.1889
SRR6308189	ovaries	no	open flowers	35.7693
SRR3384922	fruit	no	1 week after full bloom	39.3475
SRR3384921	fruit	no	2 week after full bloom	25.3735
SRR3384920	fruit	no	3 week after full bloom	61.9858
SRR3384919	fruit	no	4 week after full bloom	34.1422
SRR3384923	fruit	no	5 week after full bloom	59.5879
SRR3384918	fruit	no	6 week after full bloom	40.2109
SRR3384917	fruit	no	8 week after full bloom	66.3561
SRR3384916	fruit	no	10 week after full bloom	70.2173
SRR3384915	fruit	no	12 week after full bloom	63.4382
SRR3384914	fruit	no	14 week after full bloom	87.5155
SRR3384913	fruit	no	16 week after full bloom	45.24
SRR3384912	fruit	no	18 week after full bloom	44.0188
SRR3384911	fruit	no	19 week after full bloom	43.953
SRR3384910	fruit	no	20 week after full bloom	22.7103
SRR768128	whole fruit	no	25 days post anthesis	41.8736
SRR768129	whole fruit	no	35 days post anthesis	20.2234
SRR768130	whole fruit	no	60 days post anthesis	35.4698
SRR768131	whole fruit	no	87 days post anthesis	34.8624
SRR7343308	immature fruit flesh	no	immature	49.9654
SRR7343309	immature fruit flesh	no	immature	48.5512
SRR6320494	ripe fruit flesh	no	mature	11.9702
SRR5405143	ripe fruit peel	no	mature	21.1887
SRR6320572	ripe fruit peel	no	mature	16.2516
SRR7403504	fruit	uninfected	mature	15.7881
SRR7403506	fruit	uninfected	mature	15.8762
SRR7403507	fruit	uninfected	mature	16.9776
SRR7403500	fruit	infected with penicillium expansum	mature	0.379582
SRR7403501	fruit	infected with penicillium expansum	mature	0.281646
SRR7403508	fruit	infected with penicillium expansum	mature	0.406072
SRR7403502	fruit	infected with penicillium expansum	mature	0.366279
SRR7403503	fruit	infected with penicillium expansum	mature	0.35066
SRR7403505	fruit	infected with penicillium expansum	mature	0.577869
SRR1613973	Central seeds	no	20DAPF	2.36977
SRR1613974	Central seeds	no	20DAPF	2.71348
SRR1613975	Central seeds	no	20DAPF	1.92794
SRR1613976	Lateral seeds	no	20DAPF	2.65441
SRR1613977	Lateral seeds	no	20DAPF	1.89603
SRR1613978	Lateral seeds	no	20DAPF	2.2487
SRR3744786	stem	no	mature	25.1225
SRR3744787	stem	no	mature	25.8687
SRR3744772	stem	no	mature	24.3068
SRX765691	seedling shoot apex	no	4-6 week old seedling	27.8755
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	24.6633
SRR1089478	leaf	Virus-free	plantlets	184.95
SRR1089477	leaf	ASGV-infected	plantlets	189.706
SRR767660	leaf	uninfected	fully developed	395.144
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	280.994
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	277.653
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	236.708
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	142.36
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	195.498
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	219.836
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	224.529
SRR6308182	young leaf	no	immature leaves	44.9672
SRR3744769	leaf	no	mature	245.278
SRR3744770	leaf	no	mature	237.174
SRR3744771	leaf	no	mature	243.547
SRR5405145	leaf	no	mature	251.788
SRR6320561	leaf	no	mature	258.959