Gene detail

Detail information of MD05G1139700 Annotation

Gene ID	Annotation
MD05G1139700	glutamate receptor 2

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD05G1139700	mRNA	Chr05	27044104	27047750	+

Sequences

CDS:

MD05G1139700

ATGAATCTAGTTTGGCTTGTGTCGATACTCCTTATCTGCAGACAAGGCTCCGTAGAAGCGGCCTCAAGACCTGCTGTCGTGAATGTTGGCGCAATGTTTGCAGCAGGCAGCATCAACGGAAGAGTCTTGAAGATTGCCATTGAGGCGGCTAGGAACGATGTCAATTCTGATCCAAGCATTCTTCGTAAAACTAAATTATCCATATCTTTTCATAATTCCAACTACAGCGGATTTCTTGGACTCGTTGGAGCGTTAAGGTACATGGAGTCTGATACATTTGCTATAATTGGTCCACAAAATTCTGGGATGGCTCACATACTCTCACATCTTGCCAATGAGCTACGTGTCCCTTTATTGTCAGTCACAGCGCTGGACCCCACCCTAGCAAGTCTGCAGTACCCTTTCTTTGTTCAAACTGCACCGAATGATCAATTCCAGATGGCTGCTATTGCAGACATTGTTAGTTATTTCGGTTGGTCAGAGGTGGTCGCGATTTTCACAGACGATGAAAACAGCCGAAATGGTGTTGCTGCATTAGGTGAGAAACTTGCAGAAAAACGCCACAAGATTTCATACAAGGCAGTACTTCCACCTGACCCGGAACCAACTCGAGAAGATGTAAAAAATCTGTTGATAAAGGTTCGAATGGTGGAGTCTCGAGTGATTGTTATACACACATTCTCCACATCTGGTCTCCTGGTTTTCGATGTTGCTAAAGAACTTGGGATGATGGAGAGTGGATATGTTTGGATAGCCGCAACTTGGCTGTCTACTGTTTTAGATTCAACTTCACCTCTTTCTTCGAAAACCGCCAGCTCCATCCAAGGTGCTCTGACTCTTCGTCCACACACGCCGGATTCTAAGCGAAAAAAGGATTTCATATCAAGGTGGAACGAGTTGAGTAATGGCTCTATTGGGTTGAACCCTTACGGTCTGTATGCCTATGATACAGTTTGGATGCTTGCCCGTGCTATAGATTTGCTTTTGGAACAAGGAAGCAGCATTGCCTTTTCCAACATTACTAGTATAGGACCTCTTGGCGGTCTTAAAGGAGGGACTTTGAACCTGGGTGCATTGAGCATTTTTCAGGGTGGGAAGCAGTTGCTGGACAATATTTTGCGGACAAATACAACCGGTCTGACTGGTCGGGTAGCATTTCATCCAGATAGATCGCCATTGAATCCTTCATATGAAATCATTAACACAATCGCAAATGGATATCAAAGAATTGGATACTGGTCCAACTACTCTGGTATATCTCTTGTGGCCCCTGAGAAATTATCCAACCGGTCTAATGCGAACCAACGTTTGGACACTGTTGTATGGCCCGGAGGGACAACAGTTAAGCCTCGGGGGTGGGTTTTTCCAAACAATGGAAAGAAATTGAGAATTGGAGTGCCAAATCGAGTCAGCTTTCAAGGCTTTGTGTCACGAACAAGTAATACTGATGTAGTTGAAGGATACTGCATCGATATATTCATTGCAGCCATAAATTTGCTTCCTTATGCAGTTCCATATAAGTTTGTTCTGTTTGGTGATGGCCTCAAGAACCCTAGCTACAACGAGCTCGTAAACATGGTTGCTTCAGGTAAGTTTGATGCTGCGGTAGGTGACATTGCAATCGTCACAAACCGGACAAAGATTGTGGATTTCACTCAGCCATATATAGAGTCGGGGCTAGTTGTGGTGGCTCCAGTTAGGGATTCGAATTCAGCTTGGGCATTCTTAAGGCCATTTTCTTCATCAATGTGGGGTGTAACAGCATCCTTCTTCATAATCATTGGATTAGTGATATGGATTCTTGAACATAGAAAAAACGATGAGTTCCGAGGCCCTCCTAGGAAACAGATTGTCACAATTTTATGGTTTAGCTTCTCTACCATGTTTTTTGCTCACAGAGAGAACACCTTAACCACGCTAGGCCGCATGGTGCTGATCATATGGCTTTTTGTAGTTCTAGTGATCAACTCAAGCTACACAGCTAGCCTGACATCAATGCTCACAGTAAAACAACTATCATCCCCCATCACCGGCATCGATACCTTGATAACTAGCACAGAATCTATAGGATTCCAAATCGGATCTTTTGCTCAGAACTATTTGGTTGAGCAGCTCGACATCCCAAAGTCCAGACTAGTTCCTCTTGGCTCGCCAGAAGCTTATGCAACCGCCCTTAAGGATAAAACTGTTGCTGCTGTGGTTGACGAAAGAGCATATATGGAACTCTTCCTCTCAGAAAACTGCAAGTTCTCAATTAGGGGGGCAGAATTCACCAAAAGTGGGTGGGGATTTGCATTTCCAAGAGACTCTCCTTTCGCAATTGACATGTCAACTGCCATCCTCACTCTATCTGAAAATGGTGATCTCCAGAAAATTTATAACAAATGGCTCTCCAGAAAGATTTGTGCTTCAGAGAGCTCCAGCATCGTATCCGACCAGCTTCAACTACAAAGCTTCTGGGGGCTATTCCTTATCGCCGGCATTGTATCTTTTATTGCTCTACTCATTTACCTGTTTACCACGCTACACCAGTACAAACGCCATACCCCCGAAGCTGAAGATCAAGCCGAGCCTTCGAGCCAAGAAAACATCAACTCTCACTCTATCTTAACACGCCTCCTCACGTTCTTGTCCTTCGTCGACAAAAAGGTAGATGAATCGAAGAAAAATAAGCTGAAAAGAAAGCGCAAGGAAAGCGTAGTACCAAATGGTCCAAATGTGATTGAAAATGAAGATGATCAATCAGTAAGGAATGCTTCCAAGAGAATACAAATCGACAACCCTCAAGAGATGCGTAATGCTGACAATGACATTTGGCTAACTCGTTAA

Protein:

Gene family

Gene family	Subfamily
Transporter family	GIC

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT4G35290.1	1	ATGLR3.2;ATGLUR2;GLR3.2;GLUR2\|GLUTAMATE RECEPTOR 3.2;glutamate receptor 2
Arabidopsis thaliana	AT4G35290.2	1	ATGLR3.2;ATGLUR2;GLR3.2;GLUR2\|GLUTAMATE RECEPTOR 3.2;glutamate receptor 2
Prunus persica	Prupe.8G180400.1.p	1	glutamate receptor 2
Pyrus communis	PCP014106.1	1	-
Pyrus x bretschneideri	Pbr023968.1	1	-
Pyrus x bretschneideri	Pbr033289.1	1	-
Rubus occidentalis	Ro02_G15101	1	-
Fragaria vesca	mrna17332.1	1	glutamate receptor 3.3
Vitis vinifera	GSVIVT01023870001	1	glutamate receptor 2
Populus trichocarpa	Potri.009G168300.1	1	glutamate receptor 2

Gene Ontology

GO term	Description	Category
GO:0004970	ionotropic glutamate receptor activity	molecular_function
GO:0016020	membrane	cellular component
GO:0006810	transport	biological_process
GO:0005234	extracellular-glutamate-gated ion channel activity	molecular_function

KEGG

KO	Description	Enzyme
K05387	"glutamate receptor, ionotropic, plant"	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00497.16	SBP_bac_3	482	798	9.80E-23

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	1.03469
SRR5252888	dormant buds	no	dormant buds(0 month)	0
SRR5252889	dormant buds	no	dormant buds(0 month)	0
SRR5252886	dormant buds	no	dormant buds(1 months)	0
SRR5252887	dormant buds	no	dormant buds(1 months)	0.0380927
SRR5252884	dormant buds	no	dormant buds(2 months)	0
SRR5252882	dormant buds	no	dormant buds(3 months)	0
SRR5252883	dormant buds	no	dormant buds(3 months)	0
SRR5252880	dormant buds	no	dormant buds(4 months)	0
SRR5252881	dormant buds	no	dormant buds(4 months)	0
SRR5252878	bud break	no	bud break	0.0606499
SRR5252879	bud break	no	bud break	0.168135
SRR3744766	flower	no	mature	0.0126454
SRR3744767	flower	no	mature	0.022088
SRR3744768	flower	no	mature	0.0994251
SRR6308190	stigmas	no	open flowers	0.048837
SRR6308181	styles	no	open flowers	0.0841131
SRR6308188	filaments	no	open flowers	0
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0.0651526
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	0
SRR6308194	sepals	no	open flowers	0.0522719
SRR6308193	receptacles	no	open flowers	0.291846
SRR6308189	ovaries	no	open flowers	0.1017
SRR3384922	fruit	no	1 week after full bloom	0.0285572
SRR3384921	fruit	no	2 week after full bloom	0
SRR3384920	fruit	no	3 week after full bloom	0.054436
SRR3384919	fruit	no	4 week after full bloom	0.0502908
SRR3384923	fruit	no	5 week after full bloom	0
SRR3384918	fruit	no	6 week after full bloom	0.0532404
SRR3384917	fruit	no	8 week after full bloom	0
SRR3384916	fruit	no	10 week after full bloom	0
SRR3384915	fruit	no	12 week after full bloom	0
SRR3384914	fruit	no	14 week after full bloom	0
SRR3384913	fruit	no	16 week after full bloom	0
SRR3384912	fruit	no	18 week after full bloom	0
SRR3384911	fruit	no	19 week after full bloom	0
SRR3384910	fruit	no	20 week after full bloom	0.0237783
SRR768128	whole fruit	no	25 days post anthesis	0.137762
SRR768129	whole fruit	no	35 days post anthesis	0.0756417
SRR768130	whole fruit	no	60 days post anthesis	0.0634102
SRR768131	whole fruit	no	87 days post anthesis	0
SRR7343308	immature fruit flesh	no	immature	0
SRR7343309	immature fruit flesh	no	immature	0
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0
SRR7403506	fruit	uninfected	mature	0
SRR7403507	fruit	uninfected	mature	0
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0
SRR7403503	fruit	infected with penicillium expansum	mature	0
SRR7403505	fruit	infected with penicillium expansum	mature	0
SRR1613973	Central seeds	no	20DAPF	0
SRR1613974	Central seeds	no	20DAPF	0.0939985
SRR1613975	Central seeds	no	20DAPF	0.0239283
SRR1613976	Lateral seeds	no	20DAPF	0.100678
SRR1613977	Lateral seeds	no	20DAPF	0.0389413
SRR1613978	Lateral seeds	no	20DAPF	0.0372599
SRR3744786	stem	no	mature	0.546379
SRR3744787	stem	no	mature	0.295862
SRR3744772	stem	no	mature	0.346414
SRX765691	seedling shoot apex	no	4-6 week old seedling	0.159675
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	0.160915
SRR1089478	leaf	Virus-free	plantlets	0.0550815
SRR1089477	leaf	ASGV-infected	plantlets	0.0427261
SRR767660	leaf	uninfected	fully developed	0.503094
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0.852514
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0.142524
SRR6308182	young leaf	no	immature leaves	0.21015
SRR3744769	leaf	no	mature	0.253028
SRR3744770	leaf	no	mature	0.223478
SRR3744771	leaf	no	mature	0.164841
SRR5405145	leaf	no	mature	1.66366
SRR6320561	leaf	no	mature	0.579086