Detail information of MD05G1172900 Annotation
Gene IDAnnotation
MD05G1172900Sterile alpha motif (SAM) domain-containing protein

Network
Network CategoryGlobal NetworkConditional network
(different tissues and developmental stages)
Coexpression PositiveTop300 PCC genelistTop300 PCC genelist
Coexpression NegativeTop300 PCC genelistTop300 PCC genelist

Functional module
MethodModule IDFunction Annotation
Co-expression networkCFinderM0837ATP-dependent RNA helicase activity
double-stranded DNA binding
single-stranded DNA binding
double-stranded RNA binding
U4/U6.U5 tri-snRNP-associated protein 1
splicing factor U2AF 65 kDa subunit

Gene structure and chromatin state
more details in UCSCdetails of chromatin state

Location
GeneTypeChrStartEndStrand
MD05G1172900mRNAChr053011903530123146-

Sequences
CDS:
Protein:

Gene family
Gene familySubfamily
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Orthologous genes
SpeciesGene IDScore of InparanoidAnnotation
Arabidopsis thalianaAT3G07170.11Sterile alpha motif (SAM) domain-containing protein
Prunus persicaPrupe.8G200300.1.p1Sterile alpha motif (SAM) domain-containing protein
Pyrus communisPCP000784.11-
Pyrus x bretschneideriPbr033056.11-
Rosa multifloraRmu_sc0002698.1_g000013.11-
Rubus occidentalisRo02_G196611-
Fragaria vescamrna17591.11Sterile alpha motif (SAM) domain-containing protein
Vitis viniferaGSVIVT010383560011Sterile alpha motif (SAM) domain-containing protein
Solanum lycopersicumSolyc09g059620.2.11Sterile alpha motif (SAM) domain-containing protein
Populus trichocarpaPotri.002G244700.11Sterile alpha motif (SAM) domain-containing protein
Nicotiana benthamianaNiben101Scf11124g01022.11Sterile alpha motif (SAM) domain-containing protein LENGTH=203
Nicotiana benthamianaNiben101Scf09099g00028.10.677Sterile alpha motif (SAM) domain-containing protein LENGTH=203
Oryza sativaLOC_Os04g30910.21"SAM domain family protein, expressed"
Oryza sativaLOC_Os08g41480.11"SAM domain containing protein, putative, expressed"
Zea maysGRMZM2G082207_P011-
Zea maysGRMZM2G016926_P010.819SAM domain protein;

Gene Ontology
GO termDescriptionCategory
GO:0005515protein bindingmolecular_function

KEGG
KODescriptionEnzyme
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Pfam domain
Pfam accessionPfam nameAlignment startAlignment endE-value
PF00536.26SAM_11462001.30E-15


Expression pattern
TOP