Gene detail

Detail information of MD05G1186200 Annotation

Gene ID	Annotation
MD05G1186200	ammonium transporter 1

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD05G1186200	mRNA	Chr05	31464840	31466333	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
Transporter family	Amt

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT4G28700.1	1	AMT1\|ammonium transporter 1;4
Prunus persica	Prupe.1G573000.1.p	1	ammonium transporter 1;1
Prunus persica	Prupe.8G213000.1.p	0.812	ammonium transporter 1;1
Pyrus communis	PCP039010.1	1	-
Pyrus x bretschneideri	Pbr032934.1	1	-
Rubus occidentalis	Ro02_G05404	1	-
Fragaria vesca	mrna08363.1	1	ammonium transporter 1;1
Populus trichocarpa	Potri.002G255000.1	1	ammonium transporter 1;1

Gene Ontology

GO term	Description	Category
GO:0072488	ammonium transmembrane transport	biological_process
GO:0016020	membrane	cellular component
GO:0008519	ammonium transmembrane transporter activity	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	0
SRR5252888	dormant buds	no	dormant buds(0 month)	0
SRR5252889	dormant buds	no	dormant buds(0 month)	0
SRR5252886	dormant buds	no	dormant buds(1 months)	0
SRR5252887	dormant buds	no	dormant buds(1 months)	0.0778297
SRR5252884	dormant buds	no	dormant buds(2 months)	0
SRR5252882	dormant buds	no	dormant buds(3 months)	0.249321
SRR5252883	dormant buds	no	dormant buds(3 months)	0
SRR5252880	dormant buds	no	dormant buds(4 months)	0.124412
SRR5252881	dormant buds	no	dormant buds(4 months)	0
SRR5252878	bud break	no	bud break	0
SRR5252879	bud break	no	bud break	0.0687058
SRR3744766	flower	no	mature	2.14362
SRR3744767	flower	no	mature	2.22012
SRR3744768	flower	no	mature	2.09611
SRR6308190	stigmas	no	open flowers	0.0987849
SRR6308181	styles	no	open flowers	0.0849251
SRR6308188	filaments	no	open flowers	0
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	2.76316
SRR6308192	pollen	no	open flowers	8.98993
SRR6308191	petals	no	open flowers	0
SRR6308194	sepals	no	open flowers	0
SRR6308193	receptacles	no	open flowers	0
SRR6308189	ovaries	no	open flowers	0.0684729
SRR3384922	fruit	no	1 week after full bloom	0.408477
SRR3384921	fruit	no	2 week after full bloom	0.694808
SRR3384920	fruit	no	3 week after full bloom	0.0556173
SRR3384919	fruit	no	4 week after full bloom	0.205529
SRR3384923	fruit	no	5 week after full bloom	0
SRR3384918	fruit	no	6 week after full bloom	0
SRR3384917	fruit	no	8 week after full bloom	0.0785335
SRR3384916	fruit	no	10 week after full bloom	0
SRR3384915	fruit	no	12 week after full bloom	0
SRR3384914	fruit	no	14 week after full bloom	0
SRR3384913	fruit	no	16 week after full bloom	0
SRR3384912	fruit	no	18 week after full bloom	0
SRR3384911	fruit	no	19 week after full bloom	0
SRR3384910	fruit	no	20 week after full bloom	0
SRR768128	whole fruit	no	25 days post anthesis	0.140406
SRR768129	whole fruit	no	35 days post anthesis	0
SRR768130	whole fruit	no	60 days post anthesis	0
SRR768131	whole fruit	no	87 days post anthesis	0
SRR7343308	immature fruit flesh	no	immature	0
SRR7343309	immature fruit flesh	no	immature	0
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0
SRR7403506	fruit	uninfected	mature	0
SRR7403507	fruit	uninfected	mature	0
SRR7403500	fruit	infected with penicillium expansum	mature	0.585988
SRR7403501	fruit	infected with penicillium expansum	mature	0.745365
SRR7403508	fruit	infected with penicillium expansum	mature	0.537328
SRR7403502	fruit	infected with penicillium expansum	mature	0.692388
SRR7403503	fruit	infected with penicillium expansum	mature	0.850676
SRR7403505	fruit	infected with penicillium expansum	mature	0
SRR1613973	Central seeds	no	20DAPF	0.661227
SRR1613974	Central seeds	no	20DAPF	0.573825
SRR1613975	Central seeds	no	20DAPF	0.697905
SRR1613976	Lateral seeds	no	20DAPF	0.358517
SRR1613977	Lateral seeds	no	20DAPF	0.614115
SRR1613978	Lateral seeds	no	20DAPF	0.545899
SRR3744786	stem	no	mature	0
SRR3744787	stem	no	mature	0
SRR3744772	stem	no	mature	0
SRX765691	seedling shoot apex	no	4-6 week old seedling	1.03622
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	0.056232
SRR1089478	leaf	Virus-free	plantlets	0.336234
SRR1089477	leaf	ASGV-infected	plantlets	0.173876
SRR767660	leaf	uninfected	fully developed	0
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0.328499
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0.443439
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0
SRR6308182	young leaf	no	immature leaves	0.0707669
SRR3744769	leaf	no	mature	0.109911
SRR3744770	leaf	no	mature	0
SRR3744771	leaf	no	mature	0
SRR5405145	leaf	no	mature	0
SRR6320561	leaf	no	mature	0.146771