Gene detail

Detail information of MD05G1209300 Annotation

Gene ID	Annotation
MD05G1209300	Aldolase-type TIM barrel family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD05G1209300	mRNA	Chr05	34091775	34096063	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT3G14420.2	1	GOX1\|glycolate oxidase 1
Arabidopsis thaliana	AT3G14420.1	1	GOX1\|glycolate oxidase 1
Arabidopsis thaliana	AT3G14420.3	0.923	GOX1\|glycolate oxidase 1
Pyrus communis	PCP043487.1	1	-
Vitis vinifera	GSVIVT01038078001	1	Aldolase-type TIM barrel family protein
Vitis vinifera	GSVIVT01021520001	1	Aldolase-type TIM barrel family protein
Solanum lycopersicum	Solyc07g056540.2.1	1	Aldolase-type TIM barrel family protein
Populus trichocarpa	Potri.001G394400.1	1	Aldolase-type TIM barrel family protein
Nicotiana benthamiana	Niben101Scf04174g05001.1	1	L-lactate dehydrogenase
Oryza sativa	LOC_Os03g57220.2	1	"hydroxyacid oxidase 1, putative, expressed"
Oryza sativa	LOC_Os07g05820.1	1	"hydroxyacid oxidase 1, putative, expressed"

Gene Ontology

GO term	Description	Category
GO:0055114	oxidation-reduction process	biological_process
GO:0010181	FMN binding	molecular_function
GO:0016491	oxidoreductase activity	molecular_function

KEGG

KO	Description	Enzyme
K11517	(S)-2-hydroxy-acid oxidase	EC:1.1.3.15

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01070.14	FMN_dh	13	355	2.80E-136

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	283.126
SRR5252888	dormant buds	no	dormant buds(0 month)	5.32692
SRR5252889	dormant buds	no	dormant buds(0 month)	3.714
SRR5252886	dormant buds	no	dormant buds(1 months)	2.63153
SRR5252887	dormant buds	no	dormant buds(1 months)	1.59817
SRR5252884	dormant buds	no	dormant buds(2 months)	5.4236
SRR5252882	dormant buds	no	dormant buds(3 months)	6.61281
SRR5252883	dormant buds	no	dormant buds(3 months)	12.7263
SRR5252880	dormant buds	no	dormant buds(4 months)	10.3252
SRR5252881	dormant buds	no	dormant buds(4 months)	8.92035
SRR5252878	bud break	no	bud break	11.3445
SRR5252879	bud break	no	bud break	8.99396
SRR3744766	flower	no	mature	7.42329
SRR3744767	flower	no	mature	8.11352
SRR3744768	flower	no	mature	7.7985
SRR6308190	stigmas	no	open flowers	40.0911
SRR6308181	styles	no	open flowers	10.1334
SRR6308188	filaments	no	open flowers	1.09465
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0.225894
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	2.15203
SRR6308194	sepals	no	open flowers	63.3856
SRR6308193	receptacles	no	open flowers	8.24435
SRR6308189	ovaries	no	open flowers	10.697
SRR3384922	fruit	no	1 week after full bloom	29.2563
SRR3384921	fruit	no	2 week after full bloom	11.4027
SRR3384920	fruit	no	3 week after full bloom	34.784
SRR3384919	fruit	no	4 week after full bloom	22.6398
SRR3384923	fruit	no	5 week after full bloom	34.6574
SRR3384918	fruit	no	6 week after full bloom	28.8077
SRR3384917	fruit	no	8 week after full bloom	72.364
SRR3384916	fruit	no	10 week after full bloom	47.9199
SRR3384915	fruit	no	12 week after full bloom	30.4147
SRR3384914	fruit	no	14 week after full bloom	51.4335
SRR3384913	fruit	no	16 week after full bloom	36.9261
SRR3384912	fruit	no	18 week after full bloom	25.6301
SRR3384911	fruit	no	19 week after full bloom	42.4748
SRR3384910	fruit	no	20 week after full bloom	13.8015
SRR768128	whole fruit	no	25 days post anthesis	16.9496
SRR768129	whole fruit	no	35 days post anthesis	7.78847
SRR768130	whole fruit	no	60 days post anthesis	14.2754
SRR768131	whole fruit	no	87 days post anthesis	11.9946
SRR7343308	immature fruit flesh	no	immature	13.2715
SRR7343309	immature fruit flesh	no	immature	16.1852
SRR6320494	ripe fruit flesh	no	mature	0.282281
SRR5405143	ripe fruit peel	no	mature	0.164579
SRR6320572	ripe fruit peel	no	mature	0.244942
SRR7403504	fruit	uninfected	mature	1.99622
SRR7403506	fruit	uninfected	mature	1.9037
SRR7403507	fruit	uninfected	mature	1.70393
SRR7403500	fruit	infected with penicillium expansum	mature	0.143314
SRR7403501	fruit	infected with penicillium expansum	mature	0.212675
SRR7403508	fruit	infected with penicillium expansum	mature	0.306632
SRR7403502	fruit	infected with penicillium expansum	mature	0.177803
SRR7403503	fruit	infected with penicillium expansum	mature	0.0661974
SRR7403505	fruit	infected with penicillium expansum	mature	0.297517
SRR1613973	Central seeds	no	20DAPF	0.134145
SRR1613974	Central seeds	no	20DAPF	0.0716806
SRR1613975	Central seeds	no	20DAPF	0.0417076
SRR1613976	Lateral seeds	no	20DAPF	0.0877419
SRR1613977	Lateral seeds	no	20DAPF	0.0339378
SRR1613978	Lateral seeds	no	20DAPF	0.0259779
SRR3744786	stem	no	mature	5.16043
SRR3744787	stem	no	mature	5.94461
SRR3744772	stem	no	mature	4.84281
SRX765691	seedling shoot apex	no	4-6 week old seedling	8.43106
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	7.81175
SRR1089478	leaf	Virus-free	plantlets	317.583
SRR1089477	leaf	ASGV-infected	plantlets	291.549
SRR767660	leaf	uninfected	fully developed	704.399
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	290.007
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	556.792
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	618.952
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	287.901
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	220.789
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	269.406
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	350.033
SRR6308182	young leaf	no	immature leaves	25.0242
SRR3744769	leaf	no	mature	93.3083
SRR3744770	leaf	no	mature	91.1187
SRR3744771	leaf	no	mature	94.6527
SRR5405145	leaf	no	mature	346.201
SRR6320561	leaf	no	mature	323.803