| Gene ID | Annotation |
|---|---|
| MD05G1209600 | ubiquitin-specific protease 25 |
| Network Category | Global Network | Conditional network (different tissues and developmental stages) |
|---|---|---|
| Coexpression Positive | Top300 PCC genelist | Top300 PCC genelist |
| Coexpression Negative | Top300 PCC genelist | Top300 PCC genelist |
| Method | Module ID | Function Annotation |
|---|---|---|
| Co-expression network | CFinderM0629 | signal recognition particle subunit SRP68 Kip1 ubiquitination-promoting complex protein 1 [EC:2.3.2.27] SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:3.6.4.-] cytosol ubiquitin-conjugating enzyme E2 O [EC:2.3.2.24] COP9 signalosome cellular process regulating host cell cycle in response to virus proteolysis involved in cellular protein catabolic process ubiquitin carboxyl-terminal hydrolase 36/42 [EC:3.4.19.12] |
| more details in UCSC | details of chromatin state |
| Gene | Type | Chr | Start | End | Strand |
|---|---|---|---|---|---|
| MD05G1209600 | mRNA | Chr05 | 34113264 | 34121308 | + |
| CDS: |
| MD05G1209600 |
| Protein: |
| MD05G1209600 |
| Gene family | Subfamily |
|---|---|
| Ubiquitin Family | USP |
| Species | Gene ID | Score of Inparanoid | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | AT3G14400.1 | 1 | UBP25|ubiquitin-specific protease 25 |
| Pyrus x bretschneideri | Pbr025244.2 | 1 | - |
| Rosa multiflora | Rmu_sc0011056.1_g000009.1 | 1 | - |
| Rubus occidentalis | Ro03_G18137 | 1 | - |
| Vitis vinifera | GSVIVT01038082001 | 1 | ubiquitin-specific protease 25 |
| Solanum lycopersicum | Solyc07g056520.2.1 | 1 | ubiquitin-specific protease 25 |
| Populus trichocarpa | Potri.011G112800.2 | 1 | ubiquitin-specific protease 25 |
| Populus trichocarpa | Potri.001G394600.1 | 0.627 | ubiquitin-specific protease 25 |
| Nicotiana benthamiana | Niben101Scf04174g03005.1 | 1 | Ubiquitin carboxyl-terminal hydrolase 15 |
| Nicotiana benthamiana | Niben101Scf00897g02013.1 | 0.602 | Ubiquitin carboxyl-terminal hydrolase 23 |
| Oryza sativa | LOC_Os05g43480.1 | 1 | "ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed" |
| GO term | Description | Category |
|---|---|---|
| GO:0004221 | obsolete ubiquitin thiolesterase activity | molecular_function |
| GO:0006511 | ubiquitin-dependent protein catabolic process | biological_process |
| KO | Description | Enzyme |
|---|---|---|
| K11855 | ubiquitin carboxyl-terminal hydrolase 36/42 | EC:3.4.19.12 |
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
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