Gene detail

Detail information of MD05G1224200 Annotation

Gene ID	Annotation
MD05G1224200	ARM repeat superfamily protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD05G1224200	mRNA	Chr05	35695612	35702275	+

Sequences

CDS:

MD05G1224200

TCGTCTCTCAATTTGGCTGTTCTCAACTCCCACTCCTCCGCCGCTCTCTCCGCCGTCTGCAATGGTGGAAATTGACGAGCTAACGTTCCCAGAGGACGATGAAAGAAGCAGAGTGTTTACGCAGCTAAAAGCATACTGCTTTGAGCTTCTGGAGCTTCTCCAAAACCCTAAGAAGCACTCCTCTGCTCTCTCTTCTCTGCTCCATTTCCTTCGCCAGTCTCCGCCTCATGCTCTCCAGCCCTTCTTCGACTACACGTTGTTTCCGCTGCTGCTTCTATTGGATGCAGCTGTTGACTGTAGAACCTCAAAGAAGCTTGGTTCTGAAGAAAAATTTGTGAGTCATAATGTCCCAAAAATGCCCCAAAAAGTGAGTGATAGTGTGGCTGAAGGTGTGCTTCAGTGCCTGGAAGAACTGCTCAAGAAGTGTCTTTTAGGATCTGTAGATCAGTTGGTTGTAGTACTGAAAAAGTTGACTTATGGGGCTTTGCTTTCTCCATCTGATGCGTCAGAAGAGTTTCGTGAAGGAATTATTAAGTGTTTCAGGGAATTGCTTCTGAATTTACTTCCATGCTCTGATGAGTCTTGTGCATGTAAACGAATCTTTGGTGTGCCTATGCTTTTAGAAAACAGAGACTTGAAAGCTCCACTCAGTAGAACGTCAAAGTATGATTCAGAACCAGATGAATGTTTGCTTGCATTTCTACAGTCACAAACTGCTTCTGCAGCTGTTGGACACTGGCTATCACTTCTTCTCAAAGCTGCAGATAATGAGGCTGCACGAGGACATCTAGGTAGTGCAAAGCTTCGGATTGAAGCCTTTATGACCCTACGTATGCTTGTTGCTAAGGTTGGTACTGCTGATGCGTTAGCCTTCTTTTTACCTGGTGTTGTTAGTCAATTTGCCAAAGTTTTGCATGCCTCAAAAACAATGACCAGTGGGGCTGCTGGAAGTGGGGATGCAATTGATCAGGCAATTAGAGCTTTGGCTGAGTATCTGATGATAGTTCTGCAGGATGATGCTAACTTAACTACACTTGATATGTCTATAACTCTTAGTTCTGACTTAACTTTAAAAAAGAATGAATCTACACAATCGTTCCTGGATGAGCTTCGTAAGTTGCCTGTTAAGGCGCATGGTCAAAGTAAAATGATATTGGAAGATTCGAGTGATAAAGTGATTACAACTACTTCCAACTCTGAGAAGAAAACTGATTCTGGCAAAGGAGATGGATCTTTGCACGTGGATCGTACAAGTGATTGGATTGAGAAAACTTCAATGCATGTGGATAAACTCTTAGGTGCAACTTTTCGACATATTTGCATTCATCCAGCAAAAAAAGTGAGACAAGGTCTCCTGGCTTCCATACGAGGACTGTTGTCAAGGTGCAGTTACACGCTGAGGCAGAGTAGACAAACGCTTCTGGAGTGCTTGTGTGCTTTGGTTGTTGATGACTCTGTAGAGGTATCTGCAGGTGCACAAGAATTCCTTGAAAATTTATTCTCATCGATTGAAGATAATCAATTGGAACATGATGTTGCTCAGATGTTTAGCAGGCTCATTGACAAGCTTCCAAAAGTTGTCCTTGGGAGTGAGGGATCACTTGCAGTCTCACAAGCTCAGCAGCTACTTGTAATAATGTACTATTCTGGTCCTCAGTTTGTGGTGGATCACATCCTTCAGTCTCCGGTAACAGCTACTCGTTTCCTGGACCATTTTTCTGTTTGTATGAGTCAGAACTCGGTGTTTGCTGGTTCTCTTGATAAGCTTATTACCACAAGGCCATCCTCAGTTGGATATCTTGACTCTGTTTCTGAGTTGAATGCTGGAGCCAGTATTACCAGCGAGTGCCTGACAATAGTGGCTGCTGCTCCCCGAAATTCAAAGATTGCAGGCATCCAGGAGAAAGATATACCATACACATCAGATAATGATCAGAAGAATTATGAGAATTATAAGCTTCCGCGCATGCCTCCTTGGTTCGTATACATTGGCAGTCAGAAACTTTACCAAACTCTTTCAGGAATTCTTAGACTTGTAGGTTTATCCTTGATGACAGATAAAAAACATGGGCAGCATTTGTCACACATCACTGACATACCAGTGGGTTACTTGCGTAAATTAGTTTCTGAGGTTCGTATGAAGGATTATAATGAAGTGAGTTGGCACTCATGGTATAATAGAACTGGTTCGGGACAGTTACTGCGCCAGGCGAGCACTGCAGTGTCTATTCTTAATGAGATGATATTCGGTATGTCAGATCAAGCGACGGATATTTTCACAAGGATGTTTCAAAAAGCGAGAAAAAGAAGGAAAGAGGTTCAGGACTCTGATGCAAGATTTGCTGATGGTCAACCTTTCAAAGTTGAATCTTCCATGCTTTTTGAATCTAGTTGGAATGTTTTAAAGGACGAGGAATTAAGGAGTCACTTGATTGATTGTGTTGGTAGAATTTTACTTGAGTATTTATCTCATGAAGTATGGGATCTTCCAACAGAACATAAATCTTTATCCATGCATCCTGACTATGATGCTGAAGATATTAATCTAAACTTATTTCAGGACACGGCTATGCTACACCAGGAAATATGCATTTTCCTCCACCTTTTGTGTTATAATTTAGTTATCATTGAAGGAATAGGCATAATCAGTATCTGCCTTGGAGGAGATTTTGCTTCTAGTGGATTTCTTCATCAATCCCTTTATATGTTGCTTGAAAATCTGACTTCTTCAAACTATCGTGTTAGAAGTGCTTCTGATGGTGTATTACATATCCTGGCTGCTGTATCTGGCATTCCAACAGTTGGGCACCTAGTACTAGCGAATGCAGACTATGTGATTGATTCTATATGTCGTCAATTACGCCATTTGGAGATTAACCCTCATGTGCCAAATGTGCTGGCTGCCATGCTTTCCTATATAGGAGTCGCGTATAAAATATTGCCTCTATTTGAGGAGCCGATGCGCTCTGTTTCTTTGGAGCTCGAGATTCTTGGCAGGCATCAGCACCCTGAATTGACAATTTCCTTTTTAAAGGTCATCTTTTGTACCATACTGAGTTTCCTGTTACTGTATCGTGAGTCCATTTGTTTGGCTTTTTGGTTTCTGTTTTACCAGGAGCTATTACAGCTGTAG

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT1G79190.1	1	ARM repeat superfamily protein
Prunus persica	Prupe.4G136200.2.p	0.7	ARM repeat superfamily protein
Prunus persica	Prupe.4G136200.1.p	1.006	ARM repeat superfamily protein
Prunus persica	Prupe.4G136200.5.p	1	ARM repeat superfamily protein
Prunus persica	Prupe.4G136200.4.p	0.7	ARM repeat superfamily protein
Pyrus communis	PCP029066.1	1	-
Pyrus x bretschneideri	Pbr041096.1	1	-
Rosa multiflora	Rmu_sc0005580.1_g000012.1	1	-
Rosa multiflora	Rmu_sc0005879.1_g000007.1	0.891	-
Rubus occidentalis	Ro03_G05428	1	-
Fragaria vesca	mrna29960.1	1	ARM repeat superfamily protein
Vitis vinifera	GSVIVT01036797001	1	ARM repeat superfamily protein
Solanum lycopersicum	Solyc12g017280.1.1	1	ARM repeat superfamily protein
Populus trichocarpa	Potri.007G067700.1	1	ARM repeat superfamily protein
Nicotiana benthamiana	Niben101Scf02534g00012.1	1	ARM repeat superfamily protein LENGTH=1335
Oryza sativa	LOC_Os10g42510.1	1	expressed protein

Gene Ontology

GO term	Description	Category
GO:0005488	binding	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	1.74094
SRR5252888	dormant buds	no	dormant buds(0 month)	10.237
SRR5252889	dormant buds	no	dormant buds(0 month)	9.22363
SRR5252886	dormant buds	no	dormant buds(1 months)	6.74282
SRR5252887	dormant buds	no	dormant buds(1 months)	9.86218
SRR5252884	dormant buds	no	dormant buds(2 months)	11.1176
SRR5252882	dormant buds	no	dormant buds(3 months)	7.59753
SRR5252883	dormant buds	no	dormant buds(3 months)	9.6189
SRR5252880	dormant buds	no	dormant buds(4 months)	8.23699
SRR5252881	dormant buds	no	dormant buds(4 months)	8.1134
SRR5252878	bud break	no	bud break	9.23661
SRR5252879	bud break	no	bud break	5.72369
SRR3744766	flower	no	mature	2.68169
SRR3744767	flower	no	mature	2.42055
SRR3744768	flower	no	mature	2.28154
SRR6308190	stigmas	no	open flowers	1.75178
SRR6308181	styles	no	open flowers	1.62199
SRR6308188	filaments	no	open flowers	1.92107
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	1.1687
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	1.7416
SRR6308194	sepals	no	open flowers	1.64072
SRR6308193	receptacles	no	open flowers	2.3556
SRR6308189	ovaries	no	open flowers	1.85465
SRR3384922	fruit	no	1 week after full bloom	0.255825
SRR3384921	fruit	no	2 week after full bloom	0.138458
SRR3384920	fruit	no	3 week after full bloom	0.219446
SRR3384919	fruit	no	4 week after full bloom	0.157683
SRR3384923	fruit	no	5 week after full bloom	0.0856888
SRR3384918	fruit	no	6 week after full bloom	0.119237
SRR3384917	fruit	no	8 week after full bloom	0.172147
SRR3384916	fruit	no	10 week after full bloom	0.178906
SRR3384915	fruit	no	12 week after full bloom	0.0793801
SRR3384914	fruit	no	14 week after full bloom	0.307949
SRR3384913	fruit	no	16 week after full bloom	0.120904
SRR3384912	fruit	no	18 week after full bloom	0.113462
SRR3384911	fruit	no	19 week after full bloom	0.272059
SRR3384910	fruit	no	20 week after full bloom	0.85206
SRR768128	whole fruit	no	25 days post anthesis	2.19111
SRR768129	whole fruit	no	35 days post anthesis	0.406675
SRR768130	whole fruit	no	60 days post anthesis	1.53412
SRR768131	whole fruit	no	87 days post anthesis	2.52333
SRR7343308	immature fruit flesh	no	immature	2.41607
SRR7343309	immature fruit flesh	no	immature	3.16236
SRR6320494	ripe fruit flesh	no	mature	1.74299
SRR5405143	ripe fruit peel	no	mature	3.86576
SRR6320572	ripe fruit peel	no	mature	1.01405
SRR7403504	fruit	uninfected	mature	2.09142
SRR7403506	fruit	uninfected	mature	1.9087
SRR7403507	fruit	uninfected	mature	2.10566
SRR7403500	fruit	infected with penicillium expansum	mature	0.845741
SRR7403501	fruit	infected with penicillium expansum	mature	0.600246
SRR7403508	fruit	infected with penicillium expansum	mature	0.826088
SRR7403502	fruit	infected with penicillium expansum	mature	1.09489
SRR7403503	fruit	infected with penicillium expansum	mature	0.713362
SRR7403505	fruit	infected with penicillium expansum	mature	1.43513
SRR1613973	Central seeds	no	20DAPF	1.31816
SRR1613974	Central seeds	no	20DAPF	1.71644
SRR1613975	Central seeds	no	20DAPF	1.30813
SRR1613976	Lateral seeds	no	20DAPF	0.992515
SRR1613977	Lateral seeds	no	20DAPF	1.01209
SRR1613978	Lateral seeds	no	20DAPF	1.24221
SRR3744786	stem	no	mature	4.24873
SRR3744787	stem	no	mature	4.36209
SRR3744772	stem	no	mature	4.62628
SRX765691	seedling shoot apex	no	4-6 week old seedling	3.74919
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	3.17396
SRR1089478	leaf	Virus-free	plantlets	2.02396
SRR1089477	leaf	ASGV-infected	plantlets	2.56555
SRR767660	leaf	uninfected	fully developed	0.901818
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	3.01766
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	1.52896
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	1.29419
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	3.77728
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	1.11122
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	1.29381
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0.830294
SRR6308182	young leaf	no	immature leaves	3.14123
SRR3744769	leaf	no	mature	3.53983
SRR3744770	leaf	no	mature	4.2108
SRR3744771	leaf	no	mature	4.05458
SRR5405145	leaf	no	mature	2.80587
SRR6320561	leaf	no	mature	1.49261