Gene detail

Detail information of MD05G1224600 Annotation

Gene ID	Annotation
MD05G1224600	proteasome subunit PAB1

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD05G1224600	mRNA	Chr05	35726701	35731443	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Prunus persica	Prupe.4G136000.3.p	1	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein
Prunus persica	Prupe.4G136000.4.p	1	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein
Prunus persica	Prupe.4G136000.1.p	1	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein
Rosa multiflora	Rmu_sc0000116.1_g000003.1	1	-
Rubus occidentalis	Ro03_G10835	1	-
Oryza sativa	LOC_Os02g42320.1	1	"peptidase, T1 family, putative, expressed"

Gene Ontology

GO term	Description	Category
GO:0005839	proteasome core complex	cellular component
GO:0006511	ubiquitin-dependent protein catabolic process	biological_process
GO:0004298	threonine-type endopeptidase activity	molecular_function

KEGG

KO	Description	Enzyme
K02726	20S proteasome subunit alpha 2	EC:3.4.25.1

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF10584.5	Proteasome_A_N	6	28	1.10E-08
PF00227.22	Proteasome	31	213	9.90E-63

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	31.2457
SRR5252888	dormant buds	no	dormant buds(0 month)	25.9785
SRR5252889	dormant buds	no	dormant buds(0 month)	24.5119
SRR5252886	dormant buds	no	dormant buds(1 months)	23.5308
SRR5252887	dormant buds	no	dormant buds(1 months)	26.2286
SRR5252884	dormant buds	no	dormant buds(2 months)	23.7035
SRR5252882	dormant buds	no	dormant buds(3 months)	26.8671
SRR5252883	dormant buds	no	dormant buds(3 months)	25.8164
SRR5252880	dormant buds	no	dormant buds(4 months)	21.4509
SRR5252881	dormant buds	no	dormant buds(4 months)	22.2764
SRR5252878	bud break	no	bud break	27.1927
SRR5252879	bud break	no	bud break	28.3589
SRR3744766	flower	no	mature	12.8274
SRR3744767	flower	no	mature	12.3033
SRR3744768	flower	no	mature	11.6669
SRR6308190	stigmas	no	open flowers	18.7265
SRR6308181	styles	no	open flowers	20.269
SRR6308188	filaments	no	open flowers	26.5331
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	17.0686
SRR6308192	pollen	no	open flowers	8.7665
SRR6308191	petals	no	open flowers	17.262
SRR6308194	sepals	no	open flowers	19.7497
SRR6308193	receptacles	no	open flowers	32.7001
SRR6308189	ovaries	no	open flowers	20.6089
SRR3384922	fruit	no	1 week after full bloom	30.2621
SRR3384921	fruit	no	2 week after full bloom	34.1595
SRR3384920	fruit	no	3 week after full bloom	19.3982
SRR3384919	fruit	no	4 week after full bloom	28.3918
SRR3384923	fruit	no	5 week after full bloom	21.0641
SRR3384918	fruit	no	6 week after full bloom	22.7381
SRR3384917	fruit	no	8 week after full bloom	14.0545
SRR3384916	fruit	no	10 week after full bloom	20.1903
SRR3384915	fruit	no	12 week after full bloom	18.5278
SRR3384914	fruit	no	14 week after full bloom	20.1868
SRR3384913	fruit	no	16 week after full bloom	22.6058
SRR3384912	fruit	no	18 week after full bloom	22.6512
SRR3384911	fruit	no	19 week after full bloom	21.563
SRR3384910	fruit	no	20 week after full bloom	17.8988
SRR768128	whole fruit	no	25 days post anthesis	20.7864
SRR768129	whole fruit	no	35 days post anthesis	30.9717
SRR768130	whole fruit	no	60 days post anthesis	12.1388
SRR768131	whole fruit	no	87 days post anthesis	10.9136
SRR7343308	immature fruit flesh	no	immature	13.5202
SRR7343309	immature fruit flesh	no	immature	13.9488
SRR6320494	ripe fruit flesh	no	mature	24.8857
SRR5405143	ripe fruit peel	no	mature	14.8821
SRR6320572	ripe fruit peel	no	mature	9.25138
SRR7403504	fruit	uninfected	mature	20.7946
SRR7403506	fruit	uninfected	mature	20.3591
SRR7403507	fruit	uninfected	mature	18.9249
SRR7403500	fruit	infected with penicillium expansum	mature	15.6209
SRR7403501	fruit	infected with penicillium expansum	mature	16.8589
SRR7403508	fruit	infected with penicillium expansum	mature	15.7761
SRR7403502	fruit	infected with penicillium expansum	mature	15.6306
SRR7403503	fruit	infected with penicillium expansum	mature	13.4215
SRR7403505	fruit	infected with penicillium expansum	mature	14.967
SRR1613973	Central seeds	no	20DAPF	31.7883
SRR1613974	Central seeds	no	20DAPF	33.5067
SRR1613975	Central seeds	no	20DAPF	30.1579
SRR1613976	Lateral seeds	no	20DAPF	32.8011
SRR1613977	Lateral seeds	no	20DAPF	32.1632
SRR1613978	Lateral seeds	no	20DAPF	30.8634
SRR3744786	stem	no	mature	14.1543
SRR3744787	stem	no	mature	13.5204
SRR3744772	stem	no	mature	15.2663
SRX765691	seedling shoot apex	no	4-6 week old seedling	21.2346
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	24.3567
SRR1089478	leaf	Virus-free	plantlets	10.2225
SRR1089477	leaf	ASGV-infected	plantlets	10.5349
SRR767660	leaf	uninfected	fully developed	8.88348
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	11.1265
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	5.6519
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	5.73881
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	7.49511
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	9.14938
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	6.60831
SRR6308182	young leaf	no	immature leaves	28.0063
SRR3744769	leaf	no	mature	12.8172
SRR3744770	leaf	no	mature	10.1448
SRR3744771	leaf	no	mature	11.1329
SRR5405145	leaf	no	mature	9.3783
SRR6320561	leaf	no	mature	17.7482