Gene detail

Detail information of MD05G1229600 Annotation

Gene ID	Annotation
MD05G1229600	nuclear factor Y

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD05G1229600	mRNA	Chr05	36298931	36300862	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
Transcription Factors Family	NF-YC

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT1G56170.2	1	"ATHAP5B;HAP5B;NF-YC2\|nuclear factor Y, subunit C2"
Arabidopsis thaliana	AT1G56170.1	1	"ATHAP5B;HAP5B;NF-YC2\|nuclear factor Y, subunit C2"
Pyrus communis	PCP008681.1	1	-
Vitis vinifera	GSVIVT01036760001	1	"nuclear factor Y, subunit C2"
Oryza sativa	LOC_Os02g07450.1	1	"core histone H2A/H2B/H3/H4, putative, expressed"
Oryza sativa	LOC_Os06g45640.1	1	"core histone H2A/H2B/H3/H4, putative, expressed"
Zea mays	GRMZM2G161680_P01	1	CCAAT-HAP5 transcription factor; Nuclear transcription factor Y subunit C-2;
Zea mays	GRMZM2G124421_P01	0.801	Nuclear transcription factor Y subunit C-2;

Gene Ontology

GO term	Description	Category
GO:0043565	sequence-specific DNA binding	molecular_function
GO:0016602	CCAAT-binding factor complex	cellular component
GO:0003700	transcription factor activity, sequence-specific DNA binding	molecular_function
GO:0046982	protein heterodimerization activity	molecular_function

KEGG

KO	Description	Enzyme
K08066	"nuclear transcription factor Y, gamma"	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00808.19	CBFD_NFYB_HMF	102	165	3.40E-21

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	0.353274
SRR5252888	dormant buds	no	dormant buds(0 month)	7.88185
SRR5252889	dormant buds	no	dormant buds(0 month)	7.84105
SRR5252886	dormant buds	no	dormant buds(1 months)	9.84262
SRR5252887	dormant buds	no	dormant buds(1 months)	8.35659
SRR5252884	dormant buds	no	dormant buds(2 months)	13.7295
SRR5252882	dormant buds	no	dormant buds(3 months)	9.72564
SRR5252883	dormant buds	no	dormant buds(3 months)	8.70903
SRR5252880	dormant buds	no	dormant buds(4 months)	1.53763
SRR5252881	dormant buds	no	dormant buds(4 months)	1.76003
SRR5252878	bud break	no	bud break	2.20156
SRR5252879	bud break	no	bud break	1.75136
SRR3744766	flower	no	mature	5.70482
SRR3744767	flower	no	mature	5.65675
SRR3744768	flower	no	mature	6.48841
SRR6308190	stigmas	no	open flowers	4.21562
SRR6308181	styles	no	open flowers	6.26462
SRR6308188	filaments	no	open flowers	3.16701
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	2.14545
SRR6308192	pollen	no	open flowers	0.58068
SRR6308191	petals	no	open flowers	12.5243
SRR6308194	sepals	no	open flowers	19.3544
SRR6308193	receptacles	no	open flowers	6.93304
SRR6308189	ovaries	no	open flowers	3.24289
SRR3384922	fruit	no	1 week after full bloom	9.1498
SRR3384921	fruit	no	2 week after full bloom	7.31829
SRR3384920	fruit	no	3 week after full bloom	12.7589
SRR3384919	fruit	no	4 week after full bloom	4.60381
SRR3384923	fruit	no	5 week after full bloom	4.5669
SRR3384918	fruit	no	6 week after full bloom	5.20994
SRR3384917	fruit	no	8 week after full bloom	4.30685
SRR3384916	fruit	no	10 week after full bloom	5.75255
SRR3384915	fruit	no	12 week after full bloom	4.61527
SRR3384914	fruit	no	14 week after full bloom	7.23419
SRR3384913	fruit	no	16 week after full bloom	3.8343
SRR3384912	fruit	no	18 week after full bloom	3.64827
SRR3384911	fruit	no	19 week after full bloom	2.44459
SRR3384910	fruit	no	20 week after full bloom	2.1017
SRR768128	whole fruit	no	25 days post anthesis	4.6142
SRR768129	whole fruit	no	35 days post anthesis	2.98063
SRR768130	whole fruit	no	60 days post anthesis	3.99785
SRR768131	whole fruit	no	87 days post anthesis	3.4606
SRR7343308	immature fruit flesh	no	immature	3.19458
SRR7343309	immature fruit flesh	no	immature	3.98404
SRR6320494	ripe fruit flesh	no	mature	2.55056
SRR5405143	ripe fruit peel	no	mature	4.89982
SRR6320572	ripe fruit peel	no	mature	5.76078
SRR7403504	fruit	uninfected	mature	2.37858
SRR7403506	fruit	uninfected	mature	2.72421
SRR7403507	fruit	uninfected	mature	2.70068
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0.0692272
SRR7403502	fruit	infected with penicillium expansum	mature	0
SRR7403503	fruit	infected with penicillium expansum	mature	0.179342
SRR7403505	fruit	infected with penicillium expansum	mature	0.0537355
SRR1613973	Central seeds	no	20DAPF	1.81784
SRR1613974	Central seeds	no	20DAPF	2.1185
SRR1613975	Central seeds	no	20DAPF	2.23565
SRR1613976	Lateral seeds	no	20DAPF	2.2195
SRR1613977	Lateral seeds	no	20DAPF	1.84727
SRR1613978	Lateral seeds	no	20DAPF	2.41731
SRR3744786	stem	no	mature	2.21131
SRR3744787	stem	no	mature	2.08515
SRR3744772	stem	no	mature	2.36515
SRX765691	seedling shoot apex	no	4-6 week old seedling	2.33355
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	6.48643
SRR1089478	leaf	Virus-free	plantlets	9.71412
SRR1089477	leaf	ASGV-infected	plantlets	7.33331
SRR767660	leaf	uninfected	fully developed	1.05589
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	4.44169
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	1.40179
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	2.27324
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	3.3087
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	8.3638
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	8.66178
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	2.24371
SRR6308182	young leaf	no	immature leaves	5.05408
SRR3744769	leaf	no	mature	3.97285
SRR3744770	leaf	no	mature	4.48802
SRR3744771	leaf	no	mature	4.02433
SRR5405145	leaf	no	mature	16.9745
SRR6320561	leaf	no	mature	7.28054