Gene detail

Detail information of MD05G1231500 Annotation

Gene ID	Annotation
MD05G1231500	receptor kinase 3

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0627	serine/threonine-protein kinase PRP4 [EC:2.7.11.1] large subunit ribosomal protein L23 Unknown Function Kinase nuclear-transcribed mRNA catabolic process

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD05G1231500	mRNA	Chr05	36483672	36484579	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
Protein Kinases Family	PPC:1.7.2

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Rosa multiflora	Rmu_co8389779.1_g000001.1	1	-

Gene Ontology

GO term	Description	Category
GO:0004672	protein kinase activity	molecular_function
GO:0005524	ATP binding	molecular_function
GO:0006468	protein phosphorylation	biological_process

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.13	Pkinase_Tyr	129	190	2.10E-07

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	1.2649
SRR5252888	dormant buds	no	dormant buds(0 month)	4.35301
SRR5252889	dormant buds	no	dormant buds(0 month)	6.30341
SRR5252886	dormant buds	no	dormant buds(1 months)	8.29445
SRR5252887	dormant buds	no	dormant buds(1 months)	3.67307
SRR5252884	dormant buds	no	dormant buds(2 months)	6.25695
SRR5252882	dormant buds	no	dormant buds(3 months)	6.27539
SRR5252883	dormant buds	no	dormant buds(3 months)	4.27381
SRR5252880	dormant buds	no	dormant buds(4 months)	8.61146
SRR5252881	dormant buds	no	dormant buds(4 months)	7.38601
SRR5252878	bud break	no	bud break	5.06839
SRR5252879	bud break	no	bud break	4.75563
SRR3744766	flower	no	mature	3.11528
SRR3744767	flower	no	mature	4.06064
SRR3744768	flower	no	mature	4.28224
SRR6308190	stigmas	no	open flowers	3.87751
SRR6308181	styles	no	open flowers	2.54693
SRR6308188	filaments	no	open flowers	1.54911
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	1.97394
SRR6308192	pollen	no	open flowers	4.56619
SRR6308191	petals	no	open flowers	1.31248
SRR6308194	sepals	no	open flowers	1.27308
SRR6308193	receptacles	no	open flowers	1.52191
SRR6308189	ovaries	no	open flowers	2.26124
SRR3384922	fruit	no	1 week after full bloom	0.734738
SRR3384921	fruit	no	2 week after full bloom	0.397654
SRR3384920	fruit	no	3 week after full bloom	0.700282
SRR3384919	fruit	no	4 week after full bloom	0.970436
SRR3384923	fruit	no	5 week after full bloom	0.922877
SRR3384918	fruit	no	6 week after full bloom	0.856127
SRR3384917	fruit	no	8 week after full bloom	0.494411
SRR3384916	fruit	no	10 week after full bloom	0.32114
SRR3384915	fruit	no	12 week after full bloom	1.13991
SRR3384914	fruit	no	14 week after full bloom	1.28981
SRR3384913	fruit	no	16 week after full bloom	0.868101
SRR3384912	fruit	no	18 week after full bloom	1.222
SRR3384911	fruit	no	19 week after full bloom	0.586022
SRR3384910	fruit	no	20 week after full bloom	1.07062
SRR768128	whole fruit	no	25 days post anthesis	0.874877
SRR768129	whole fruit	no	35 days post anthesis	0
SRR768130	whole fruit	no	60 days post anthesis	0.80539
SRR768131	whole fruit	no	87 days post anthesis	0
SRR7343308	immature fruit flesh	no	immature	2.17944
SRR7343309	immature fruit flesh	no	immature	1.09073
SRR6320494	ripe fruit flesh	no	mature	6.09217
SRR5405143	ripe fruit peel	no	mature	0.617417
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0.809624
SRR7403506	fruit	uninfected	mature	1.49669
SRR7403507	fruit	uninfected	mature	1.01546
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	1.16447
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0.649021
SRR7403503	fruit	infected with penicillium expansum	mature	0.241635
SRR7403505	fruit	infected with penicillium expansum	mature	0.217201
SRR1613973	Central seeds	no	20DAPF	0.592112
SRR1613974	Central seeds	no	20DAPF	0.81359
SRR1613975	Central seeds	no	20DAPF	0.853536
SRR1613976	Lateral seeds	no	20DAPF	0.158437
SRR1613977	Lateral seeds	no	20DAPF	0.490255
SRR1613978	Lateral seeds	no	20DAPF	0.797449
SRR3744786	stem	no	mature	5.07794
SRR3744787	stem	no	mature	6.09944
SRR3744772	stem	no	mature	6.87637
SRX765691	seedling shoot apex	no	4-6 week old seedling	4.34781
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	4.2791
SRR1089478	leaf	Virus-free	plantlets	0
SRR1089477	leaf	ASGV-infected	plantlets	0.268882
SRR767660	leaf	uninfected	fully developed	0
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0.248084
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0.900839
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0
SRR6308182	young leaf	no	immature leaves	3.82884
SRR3744769	leaf	no	mature	6.40317
SRR3744770	leaf	no	mature	6.68674
SRR3744771	leaf	no	mature	5.48379
SRR5405145	leaf	no	mature	4.99129
SRR6320561	leaf	no	mature	5.81702