Gene detail

Detail information of MD05G1248500 Annotation

Gene ID	Annotation
MD05G1248500	PLATZ transcription factor family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0172	enhancer of yellow 2 transcription factor

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD05G1248500	mRNA	Chr05	37994133	37997028	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
Transcription Factors Family	PLATZ

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT1G31040.1	1	PLATZ transcription factor family protein
Pyrus x bretschneideri	Pbr002472.1	1	-
Rosa multiflora	Rmu_sc0005607.1_g000024.1	1	-
Rubus occidentalis	Ro03_G05845	1	-
Fragaria vesca	mrna19989.1	1	PLATZ transcription factor family protein
Vitis vinifera	GSVIVT01012125001	1	PLATZ transcription factor family protein
Solanum lycopersicum	Solyc02g068510.1.1	1	PLATZ transcription factor family protein
Populus trichocarpa	Potri.001G159200.1	1	PLATZ transcription factor family protein
Nicotiana benthamiana	Niben101Scf01739g04001.1	1	PLATZ transcription factor family protein LENGTH=243
Oryza sativa	LOC_Os02g07650.1	1	"zinc-binding protein, putative, expressed"
Oryza sativa	LOC_Os06g45540.1	1	"zinc-binding protein, putative, expressed"
Zea mays	GRMZM2G017882_P01	1	PLATZ transcription factor family protein

Gene Ontology

GO term	Description	Category
--	--	--

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	2.3356
SRR5252888	dormant buds	no	dormant buds(0 month)	1.85442
SRR5252889	dormant buds	no	dormant buds(0 month)	4.58291
SRR5252886	dormant buds	no	dormant buds(1 months)	3.76907
SRR5252887	dormant buds	no	dormant buds(1 months)	1.66907
SRR5252884	dormant buds	no	dormant buds(2 months)	6.93033
SRR5252882	dormant buds	no	dormant buds(3 months)	6.41607
SRR5252883	dormant buds	no	dormant buds(3 months)	4.66093
SRR5252880	dormant buds	no	dormant buds(4 months)	5.33607
SRR5252881	dormant buds	no	dormant buds(4 months)	4.14597
SRR5252878	bud break	no	bud break	2.92319
SRR5252879	bud break	no	bud break	3.09416
SRR3744766	flower	no	mature	0.575852
SRR3744767	flower	no	mature	0.304268
SRR3744768	flower	no	mature	0.310665
SRR6308190	stigmas	no	open flowers	0
SRR6308181	styles	no	open flowers	0
SRR6308188	filaments	no	open flowers	0
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	0
SRR6308194	sepals	no	open flowers	0
SRR6308193	receptacles	no	open flowers	0
SRR6308189	ovaries	no	open flowers	0
SRR3384922	fruit	no	1 week after full bloom	0.125173
SRR3384921	fruit	no	2 week after full bloom	0.135492
SRR3384920	fruit	no	3 week after full bloom	0
SRR3384919	fruit	no	4 week after full bloom	0
SRR3384923	fruit	no	5 week after full bloom	0
SRR3384918	fruit	no	6 week after full bloom	0
SRR3384917	fruit	no	8 week after full bloom	0
SRR3384916	fruit	no	10 week after full bloom	0
SRR3384915	fruit	no	12 week after full bloom	0
SRR3384914	fruit	no	14 week after full bloom	0
SRR3384913	fruit	no	16 week after full bloom	0
SRR3384912	fruit	no	18 week after full bloom	0
SRR3384911	fruit	no	19 week after full bloom	0
SRR3384910	fruit	no	20 week after full bloom	0
SRR768128	whole fruit	no	25 days post anthesis	0
SRR768129	whole fruit	no	35 days post anthesis	0.164463
SRR768130	whole fruit	no	60 days post anthesis	0.551476
SRR768131	whole fruit	no	87 days post anthesis	0
SRR7343308	immature fruit flesh	no	immature	0
SRR7343309	immature fruit flesh	no	immature	0
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0
SRR7403506	fruit	uninfected	mature	0
SRR7403507	fruit	uninfected	mature	0
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0
SRR7403503	fruit	infected with penicillium expansum	mature	0
SRR7403505	fruit	infected with penicillium expansum	mature	0
SRR1613973	Central seeds	no	20DAPF	0.332817
SRR1613974	Central seeds	no	20DAPF	0.127029
SRR1613975	Central seeds	no	20DAPF	0.172462
SRR1613976	Lateral seeds	no	20DAPF	0.326534
SRR1613977	Lateral seeds	no	20DAPF	0.0842003
SRR1613978	Lateral seeds	no	20DAPF	0.225582
SRR3744786	stem	no	mature	1.18533
SRR3744787	stem	no	mature	1.05716
SRR3744772	stem	no	mature	1.11289
SRX765691	seedling shoot apex	no	4-6 week old seedling	8.94751
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	4.09893
SRR1089478	leaf	Virus-free	plantlets	2.14343
SRR1089477	leaf	ASGV-infected	plantlets	2.21685
SRR767660	leaf	uninfected	fully developed	1.44729
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0.689212
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	20.9532
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0.623177
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0
SRR6308182	young leaf	no	immature leaves	2.2211
SRR3744769	leaf	no	mature	0.843613
SRR3744770	leaf	no	mature	0.70553
SRR3744771	leaf	no	mature	0.253754
SRR5405145	leaf	no	mature	0
SRR6320561	leaf	no	mature	0