Gene detail

Detail information of MD05G1250400 Annotation

Gene ID	Annotation
MD05G1250400	sulfiredoxin

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD05G1250400	mRNA	Chr05	38268001	38270488	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT1G31170.2	1	ATSRX;SRX\|SULFIREDOXIN
Arabidopsis thaliana	AT1G31170.1	1	ATSRX;SRX\|SULFIREDOXIN
Arabidopsis thaliana	AT1G31170.3	0.824	ATSRX;SRX\|SULFIREDOXIN
Arabidopsis thaliana	AT1G31170.4	0.824	ATSRX;SRX\|SULFIREDOXIN
Prunus persica	Prupe.4G113200.2.p	1	sulfiredoxin
Prunus persica	Prupe.4G113200.4.p	1	sulfiredoxin
Pyrus communis	PCP006921.1	1	-
Rosa multiflora	Rmu_sc0002548.1_g000022.1	1	-
Rubus occidentalis	Ro03_G05872	1	-
Fragaria vesca	mrna20019.1	1	sulfiredoxin
Vitis vinifera	GSVIVT01012104001	1	sulfiredoxin
Solanum lycopersicum	Solyc02g068710.2.1	1	sulfiredoxin
Populus trichocarpa	Potri.012G124500.1	1	sulfiredoxin
Nicotiana benthamiana	Niben101Scf03076g01023.1	1	ParB domain-containing protein nuclease [Fischerella sp. PCC 9339]
Oryza sativa	LOC_Os06g07760.1	1	"sulfiredoxin-1, putative, expressed"
Zea mays	GRMZM2G007683_P01	1	-

Gene Ontology

GO term	Description	Category
GO:0055114	oxidation-reduction process	biological_process
GO:0003677	DNA binding	molecular_function
GO:0032542	sulfiredoxin activity	molecular_function

KEGG

KO	Description	Enzyme
K12260	sulfiredoxin	EC:1.8.98.2

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	62.8657
SRR5252888	dormant buds	no	dormant buds(0 month)	1.93649
SRR5252889	dormant buds	no	dormant buds(0 month)	2.74184
SRR5252886	dormant buds	no	dormant buds(1 months)	0.273325
SRR5252887	dormant buds	no	dormant buds(1 months)	1.5977
SRR5252884	dormant buds	no	dormant buds(2 months)	2.31957
SRR5252882	dormant buds	no	dormant buds(3 months)	3.25697
SRR5252883	dormant buds	no	dormant buds(3 months)	3.16877
SRR5252880	dormant buds	no	dormant buds(4 months)	2.78612
SRR5252881	dormant buds	no	dormant buds(4 months)	1.9328
SRR5252878	bud break	no	bud break	3.23757
SRR5252879	bud break	no	bud break	1.53862
SRR3744766	flower	no	mature	8.11455
SRR3744767	flower	no	mature	7.74848
SRR3744768	flower	no	mature	7.25933
SRR6308190	stigmas	no	open flowers	9.24519
SRR6308181	styles	no	open flowers	13.2097
SRR6308188	filaments	no	open flowers	5.63247
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	1.20415
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	5.79423
SRR6308194	sepals	no	open flowers	12.5913
SRR6308193	receptacles	no	open flowers	7.72207
SRR6308189	ovaries	no	open flowers	8.5243
SRR3384922	fruit	no	1 week after full bloom	19.0612
SRR3384921	fruit	no	2 week after full bloom	18.1566
SRR3384920	fruit	no	3 week after full bloom	40.0719
SRR3384919	fruit	no	4 week after full bloom	34.2392
SRR3384923	fruit	no	5 week after full bloom	48.1577
SRR3384918	fruit	no	6 week after full bloom	44.7761
SRR3384917	fruit	no	8 week after full bloom	53.651
SRR3384916	fruit	no	10 week after full bloom	46.6552
SRR3384915	fruit	no	12 week after full bloom	45.4008
SRR3384914	fruit	no	14 week after full bloom	49.8231
SRR3384913	fruit	no	16 week after full bloom	39.7656
SRR3384912	fruit	no	18 week after full bloom	35.9895
SRR3384911	fruit	no	19 week after full bloom	33.0124
SRR3384910	fruit	no	20 week after full bloom	15.8714
SRR768128	whole fruit	no	25 days post anthesis	16.5726
SRR768129	whole fruit	no	35 days post anthesis	12.7538
SRR768130	whole fruit	no	60 days post anthesis	15.1362
SRR768131	whole fruit	no	87 days post anthesis	10.1272
SRR7343308	immature fruit flesh	no	immature	20.6286
SRR7343309	immature fruit flesh	no	immature	18.0354
SRR6320494	ripe fruit flesh	no	mature	7.31641
SRR5405143	ripe fruit peel	no	mature	10.8641
SRR6320572	ripe fruit peel	no	mature	11.4832
SRR7403504	fruit	uninfected	mature	8.1976
SRR7403506	fruit	uninfected	mature	11.0155
SRR7403507	fruit	uninfected	mature	9.90376
SRR7403500	fruit	infected with penicillium expansum	mature	0.62315
SRR7403501	fruit	infected with penicillium expansum	mature	0.693555
SRR7403508	fruit	infected with penicillium expansum	mature	0.499979
SRR7403502	fruit	infected with penicillium expansum	mature	0.386556
SRR7403503	fruit	infected with penicillium expansum	mature	0.143917
SRR7403505	fruit	infected with penicillium expansum	mature	0.258729
SRR1613973	Central seeds	no	20DAPF	4.8699
SRR1613974	Central seeds	no	20DAPF	4.6087
SRR1613975	Central seeds	no	20DAPF	4.36187
SRR1613976	Lateral seeds	no	20DAPF	4.98365
SRR1613977	Lateral seeds	no	20DAPF	4.8099
SRR1613978	Lateral seeds	no	20DAPF	4.18767
SRR3744786	stem	no	mature	13.7814
SRR3744787	stem	no	mature	15.1236
SRR3744772	stem	no	mature	15.3362
SRX765691	seedling shoot apex	no	4-6 week old seedling	6.27686
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	8.65551
SRR1089478	leaf	Virus-free	plantlets	15.7861
SRR1089477	leaf	ASGV-infected	plantlets	13.6952
SRR767660	leaf	uninfected	fully developed	20.8341
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	17.654
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	23.2132
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	73.4289
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	22.3267
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	17.0435
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	13.9582
SRR6308182	young leaf	no	immature leaves	7.51806
SRR3744769	leaf	no	mature	21.434
SRR3744770	leaf	no	mature	19.4894
SRR3744771	leaf	no	mature	19.8045
SRR5405145	leaf	no	mature	29.7237
SRR6320561	leaf	no	mature	32.7198