Gene detail

Detail information of MD05G1251500 Annotation

Gene ID	Annotation
MD05G1251500	peroxisome 1

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0738	G patch domain-containing protein 1 E3 ubiquitin-protein ligase KEG [EC:2.7.11.1 2.3.2.27] primary miRNA binding protein complex scaffold pre-miRNA binding nuclear-transcribed mRNA catabolic process mitotic cell cycle protein import into peroxisome matrix perinuclear region of cytoplasm fatty acid beta-oxidation secretion by cell

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD05G1251500	mRNA	Chr05	38316327	38324887	-

Sequences

CDS:

MD05G1251500

AAACACGTTATAAAATATACACACCGAAAAATCAATGGGATAATTTGGAGGGAGGGAGGAAGACGTAATTTTACTCAACTCGAGAAAGCCTCGGGGGACGACGTTTTCCGGCACTGCTCAAGCTTGACTCTTTATCTTCTTCCCGAAACGGAGCTCTACTCCGTCTCTCTGATTCTTTCCGGCCATGGAGTTTGAGGTCCGGTTAGTCGGAGGCATAGACAACTGCTTCGTCTCTCTCCCCCTGTCCCTAATCCAAACCCTCCACTCCTCCTCCCCATCCCTCCCGCCAGTTCTCGCTCTCGAGCTCCGCTCTTCCTCCACCGCCGACCGCTGGAACGTCGCTTGGTCCGGCGCCACCTCCGCTTCTCAGGCTATCGAGGTTGCTCAGCAATTTGGGGATTGCATTTCGTTGCCGGATCGCACTAGGGTTCAAGTTCGAGCTCTTTCGAATGTGCAGAAGGCTACTCTGGTCACTATTGAGCCTTCTACTGAGGATGATTGGGAGGTTTTGGAGCTTAATGCTGAGCTAGCAGAGGCTGCAATTTTGAATCAGGTGAGGATTCTCCATGAAGAAATGAGATTTCCTTTGTGGTTGAATGGCCGCACTTCCATTACATTCCAAGTTGCTTCAACCTTCCCGAAGAAAGCGGTGGTGCAACTGGTGCCAGGGACTGAAGTTGCAGTTGCTCCAAAGAGACGCAAGACTATCAACCCACATGGAGATCGTTCCATGCTCTCTTCTAATGGAAAGAATCATATTTCAAAGGCACTACTGCGCATTCAAGATCCGGACAGGAGATTAGTTCACAAAAGTTATGTCAAAGGCGTTGAGCTTGGAGTTGTTCTTACTTCTGTTGCTATGGTTCACCCAGAAACAGCAAAAATGTTCTCATTACAATCTCTTCAGTTCGTAGCTGTTGTGCCAAGATTATCACCAAAAGAGAGCATGAAAAATTCTGAAAATGATGGGTTGAAAACTAGAAGCAGTTCAACTCTGAAGGAATCTAACAGTGGAAATGACAAAAAGGACAATCGTGAAGTAATTGTTCGGCTGTTGATTTCTGATTCAGTTGCTAAAGGGCATGTTATGATTGCCCAATCTCTTCGTCTTTATTTGAGAACTCGTCTGCATTCATGGGTTTATTTGAAGGAATGCAATGGTATTTTGAAGAATGACATTCCATTCCTTTCACTTTCTCCTTGTCACTTTAAGATATTGAAGGACAAAGCTGTTGAAAGAAATGGTCTAGATGTTCTTGAAAGGCATAAACTTCGCAAGAAGAAAAACATGCTTCTGACGACCGGCTCAAGCACCTATATAGATGTTGCTGATTGGTCTACCCACGACAAAGTTGTTTCTGCTTTTTCATATGAAACTTCTTGCAAAGAAGATGAAGAGGCGGCTCCGCATTCTGACGAGTTAAAGGGAGTAGAGAGTCTTGTTAAAGTGTGGATCCTTGCACAATTTGATGCTATTGCTTCCAATGCAGGAGAAAAAGTTAATTCCTTGGTTTTGGGAAATGAAACTATACTTCACTTTGAAGTGAAGGTGCATAAGTTTGAGATTGAGGAAAAGCTACAAGAATCATCAGATGGATCCCTCGAAAACAAAAAGAAGAATGCTGAGCAACCAGTTGAAATCTTGTATGTACTGAAATTCTCCAATGAATCTCAACTTGCTGGAAATGCATATGAGCTTGTATTTGATGAAAGAAACAAAGGCAGTGATAATGTTGGAGGTGTAGAGTCAATTGGAAAGCTGAAGGTGGTCGATCCTAAGACGGCCGATCCTGTGACCTTTAATTCGGTTAGAGAGAGAATGTCTGAAAAAGATATCAATTCTGATGTATCAACCTTGAGCTGGATGGGGACAATTGCTTCTGACGTTTTAAATAGAATGTTGGTGTTGTTATCTCCTGCTTCTGGGGCATGGTTCAGCTCACACGATCTTCCGCTCCCTGGACATGTTCTGCTATATGGACCTCCTGGTTCGGGAAAGACATTATTGGCGAGAACTGTTGCTAAGTGTCTCGAAGAACATGAAAACCTCTTAGCGCACGTAGTTTTTGTACCTTGTTCTCAACTTGCCTTGGAAAAGGCCTCGGCCATTCGCCAAGCACTTTTGAGCTATATATCTGAGGCTTTAGATCATGCTCCATCTCTTGTAATTCTTGATGATCTTGATAGCATTGTTTCATCCTCTTCAGACTCCGAAGGATCTCAAGCTTCAACCTCTGTGCTTGCACTGACAGAGTTTCTCATTGACATTATGGATGAATATTGGGAAAAAAGGAAGAGCTCATGTGGAATTGGTCCGCTTGCATTCATAGCTTCAATAAAGTCTTTAGAGAGTATACCACAGTCATTAAGCTCTTCAGGAAGGTTTGACTTTCACGTGCAATTGCCTGCTCCTGCTGCCTCAGAACGTGCAGCCATTTTAAAGCATGAAATTCAGAGACGCTGCTTACAATGTTCTGATGATATCTTAGAAGATGTAGCTTCCAAATGTGATGGCTATGATTCATATGATCTGGAAATCTTGGTTGATAGAACTGTTCATGCTGCCATTGGTCGTTTTCTGCCTCATCATTTGTCCGTCGACAAGTGTGAAAAGCCCACTTTACTTAGGGATGATTTCTCTCGGGCAATGCATGATTTCCTTCCAGTTGCCATGCGCGACATCACTAAATCTGCTCCTGAAGGTGGGCGGTCTGGGTGGGATGATGTTGGCGGTCTTGTTGACATCCGCAATTCAATTAAAGAGATGATTGAATTGCCTTCAAGGTTTCCAAATATATTTGCCAAAGCTCCTTTAAGGTTGCGATCAAATATTCTATTGTATGGTCCTCCTGGCTGTGGAAAGACACACATAGTTGGTTCTGCTGCTGCGGCTTGTTCACTTAGATTTATATCCATCAAAGGACCTGAACTCTTGAATAAATACATTGGCGCTTCTGAGCAAGCTGTTCGGGATATATTCTCCAAAGCTGCTGCTGCAGCACCATGTCTTCTCTTTTTTGACGAATTTGATTCCATAGCCCCCAAAAGAGGGCATGACAATACTGGAGTAACTGATCGTGTTGTCAATCAGTTTCTGACCGAATTGGATGGTGTTGAAGTTTTGACTGGTGTTTTTGTTTTTGCTGCAACAAGTAGACCAGATTTACTTGATGCTGCACTGTTGAGACCTGGTAGGCTAGATCGCCTTCTGTTTTGTGATTTTCCATCTCTGCGTGAAAGGTTGGATATTTTGACGGTCCTTTCGAAAAAGCTACCAATGGATGACGATGTGGATTTAAGAGCCATAGCTTATATGACTGAGGGATTTAGTGGGGCCGACCTTCAAGCTCTGCTCTCAGATGCTCAGCTAGCAGCAGTGCATGAGATTCTAAACGCTGAAGATACCAGAGATCCAGGGAAGAAGCCAGTTATTTCTGATGCTCTCTTGAAGTCTACTGCTTCGAGGGCAAGACCATCTGTTTCCGAAGCTGAGAAGACAAGATTGTATGGCATTTACAACCAGTTCTTGGATTCAAAGAGATCTGTTGCTGCACAGTCGAGAGATGCAAAAGGCAAGAGGGCAACCCTAGCATGATTTACGAGTGAATTTAATGACCTAATGTTCTTCAGGAAATCAAAATCCAGATGGTTGCTTGACCATTTCGGCAATGCTTCTGATGGTGCGGCCTTCACTTTATGTCGCTAGGCTGATGCTGCTGCTTCAGATGACCTTTGCCAAAGAGATATATAGTGGTGTCGTACGCCCAGGGTAAGGTTGGCAGCAAAGGATGGGTGAGAACTGAGAACAGGTTTGCAATAAAATTTCATCAGGACTCGTAGTTCGATAGAATATCAAAATTCCAATGATTTTTGTTCTTGAATATAGTGGCTATACATAGTAGTTCAGTCCTGGACATTAAGAATAGCGCTTGAAAGGCTTAGCGTGACCGTAGCGTTGCTTGGGATTAATTTGTCTGTAACAAGAAGGGATTCATATATTTTTGAACTGTTACGAAGGTCCCCATGGAGTAATAAGAGGGTTCATGTAAACAAAGTGAACCCGTTGGTTTATTTATGAAATATCAGAGTTCTTTTTCAGTAG

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT5G08470.1	1	EMB2817;PEX1\|EMBRYO DEFECTIVE 2817;peroxisome 1
Prunus persica	Prupe.4G112300.1.p	1	peroxisome 1
Pyrus communis	PCP006927.1	1	-
Rosa multiflora	Rmu_sc0000116.1_g000006.1	1	-
Rubus occidentalis	Ro03_G10839	1	-
Fragaria vesca	mrna20035.1	1	peroxisome 1
Vitis vinifera	GSVIVT01013614001	1	peroxisome 1
Populus trichocarpa	Potri.001G174100.2	1	peroxisome 1
Nicotiana benthamiana	Niben101Scf08753g02038.1	1	Peroxisome biogenesis factor 1
Oryza sativa	LOC_Os08g44240.1	1	"AAA-type ATPase family protein, putative, expressed"
Zea mays	GRMZM2G070305_P01	1	peroxisome 1

Gene Ontology

GO term	Description	Category
GO:0005778	peroxisomal membrane	cellular component
GO:0005524	ATP binding	molecular_function
GO:0006625	protein targeting to peroxisome	biological_process
GO:0017111	nucleoside-triphosphatase activity	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF09262.7	PEX-1N	96	169	2.90E-24

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	4.29628
SRR5252888	dormant buds	no	dormant buds(0 month)	10.8166
SRR5252889	dormant buds	no	dormant buds(0 month)	12.2007
SRR5252886	dormant buds	no	dormant buds(1 months)	10.7512
SRR5252887	dormant buds	no	dormant buds(1 months)	11.0165
SRR5252884	dormant buds	no	dormant buds(2 months)	12.6426
SRR5252882	dormant buds	no	dormant buds(3 months)	10.9564
SRR5252883	dormant buds	no	dormant buds(3 months)	14.0628
SRR5252880	dormant buds	no	dormant buds(4 months)	13.228
SRR5252881	dormant buds	no	dormant buds(4 months)	12.1369
SRR5252878	bud break	no	bud break	11.0543
SRR5252879	bud break	no	bud break	6.67181
SRR3744766	flower	no	mature	6.99088
SRR3744767	flower	no	mature	6.9513
SRR3744768	flower	no	mature	6.86654
SRR6308190	stigmas	no	open flowers	6.22762
SRR6308181	styles	no	open flowers	6.78543
SRR6308188	filaments	no	open flowers	4.33497
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	5.45359
SRR6308192	pollen	no	open flowers	0.747378
SRR6308191	petals	no	open flowers	6.66212
SRR6308194	sepals	no	open flowers	6.63166
SRR6308193	receptacles	no	open flowers	4.30491
SRR6308189	ovaries	no	open flowers	5.07996
SRR3384922	fruit	no	1 week after full bloom	2.13184
SRR3384921	fruit	no	2 week after full bloom	2.20364
SRR3384920	fruit	no	3 week after full bloom	2.34306
SRR3384919	fruit	no	4 week after full bloom	2.14773
SRR3384923	fruit	no	5 week after full bloom	1.92989
SRR3384918	fruit	no	6 week after full bloom	1.86192
SRR3384917	fruit	no	8 week after full bloom	1.36991
SRR3384916	fruit	no	10 week after full bloom	2.21614
SRR3384915	fruit	no	12 week after full bloom	2.32415
SRR3384914	fruit	no	14 week after full bloom	2.21556
SRR3384913	fruit	no	16 week after full bloom	2.51879
SRR3384912	fruit	no	18 week after full bloom	3.32204
SRR3384911	fruit	no	19 week after full bloom	2.63476
SRR3384910	fruit	no	20 week after full bloom	3.03845
SRR768128	whole fruit	no	25 days post anthesis	2.8512
SRR768129	whole fruit	no	35 days post anthesis	1.57825
SRR768130	whole fruit	no	60 days post anthesis	2.51805
SRR768131	whole fruit	no	87 days post anthesis	3.69434
SRR7343308	immature fruit flesh	no	immature	5.44038
SRR7343309	immature fruit flesh	no	immature	4.4075
SRR6320494	ripe fruit flesh	no	mature	7.09562
SRR5405143	ripe fruit peel	no	mature	8.19428
SRR6320572	ripe fruit peel	no	mature	6.67862
SRR7403504	fruit	uninfected	mature	6.0798
SRR7403506	fruit	uninfected	mature	5.68876
SRR7403507	fruit	uninfected	mature	5.53488
SRR7403500	fruit	infected with penicillium expansum	mature	4.6395
SRR7403501	fruit	infected with penicillium expansum	mature	5.24565
SRR7403508	fruit	infected with penicillium expansum	mature	4.81557
SRR7403502	fruit	infected with penicillium expansum	mature	4.84236
SRR7403503	fruit	infected with penicillium expansum	mature	4.94931
SRR7403505	fruit	infected with penicillium expansum	mature	5.36612
SRR1613973	Central seeds	no	20DAPF	2.62593
SRR1613974	Central seeds	no	20DAPF	3.33516
SRR1613975	Central seeds	no	20DAPF	2.48154
SRR1613976	Lateral seeds	no	20DAPF	2.56788
SRR1613977	Lateral seeds	no	20DAPF	2.85186
SRR1613978	Lateral seeds	no	20DAPF	3.04112
SRR3744786	stem	no	mature	8.98733
SRR3744787	stem	no	mature	9.35903
SRR3744772	stem	no	mature	9.24024
SRX765691	seedling shoot apex	no	4-6 week old seedling	5.19351
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	3.97333
SRR1089478	leaf	Virus-free	plantlets	3.89484
SRR1089477	leaf	ASGV-infected	plantlets	3.79807
SRR767660	leaf	uninfected	fully developed	2.14616
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	3.77968
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	1.45885
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	6.15557
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	4.86643
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	2.34736
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	2.35183
SRR6308182	young leaf	no	immature leaves	3.54598
SRR3744769	leaf	no	mature	10.358
SRR3744770	leaf	no	mature	11.2416
SRR3744771	leaf	no	mature	11.1146
SRR5405145	leaf	no	mature	5.59736
SRR6320561	leaf	no	mature	5.12414