Gene detail

Detail information of MD05G1254700 Annotation

Gene ID	Annotation
MD05G1254700	exocyst complex component 84B

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0523	intra-Golgi vesicle-mediated transport positive regulation of calcium ion transport protein import into peroxisome matrix lithium ion transport

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD05G1254700	mRNA	Chr05	38517529	38523837	-

Sequences

CDS:

MD05G1254700

TTTGCCCTCTCTCTCTCTCTCTCTCTCTCTCGGACAAAAGCTGTCTGTAGCATCTACTTCAGTAAACTGAGGGTGAAGCCGGCAGAGAGAGCAAAGGCAAACTCAGAGATCAGTCGAAAATGGAGAGCAGCGAAGAAGACGACGACTTTCCATCGATCGAGAGCATCACTCCCCAGTCCAAAGTCGACTCTCTTTACCAATCCCGCTCTGAAAAGGGAATTAGAAAGCTATGCTGCGAGCTGTTAGATTTAAAGGATGCAGTGGAGAACTTATGTGGGAATATGAGAACAAAGTATTTGGCTTTTTTGAGGATATCTGAGGAGGCTGTAGAAATGGAGCACGAGTTGGTTGAGCTCCGAAAGCATATTTCAACTCAAGGGATTCTTGTGCAGGATTTGATGACTGGTGTATGCCATCAATTGGAACAGTGGAATCGGTCTACAAGTGAAGTCGAGCCAAACCCTGATATTTGTGAACTTCAAGATCCATTGCCAATTGAAACAGACAATCACAAGATTTTTTTGGAGAAAATTGATGTTCTCTTAGCTGAACATAAAGTAGAAGAAGCATTAGAGGCTCTAGATGCTGAAGAGAGAAACTCTCCAGAGCTGAAAAGCTCGGGAGATACTTCAACAACTGATGGATCCTCATACAGATCCGATTTCTTGAAAAGAAAAGCACTGCTCGAGGATCAGCTGGTTGAGATTATTGGACAACCTTTTATTAGTTTTGTTGAGTTGAAGAAGGCCTTAAGTGGGCTAATAAAGCTTGGAAAAGGCCCTTTGGCACACCAGTTACTGCTCAAATTTTATGGGTCCCATATTGAGAAGAGCACCGAAGCTCTTTTTCCTTCTTCTTCTGTCTGTCCAAAGACATATCCAGCAACATTGTCTAAGCTTGTATTTTCTACAATCTCACTGGCAACGACGAAGTCTGGTTTAATATTTGGTGATGATCGTGTTTATACCAATAGAGTAGTCCAATGGGCAGAGTGGGAAATTGAATACTTTGTACGGTTGGTGAAAGAGAATGCACCATCTTCTGACACGGTGTCTGCTTTACGTGCAGCTAGCATTTGTGTTCAGGCTAGTCTCAACTACTCTTTGATGCTGGAACGACAAGGGCTGAAACTGTCAAAATTGATTCTAGTGTTGTTGCGGCCTTTTATTGAAGAAGTTTTAGAGTTGAACTTTAGACGGGCAAGAAAAGTTGTCCTTGACTTGGTAGAAGCTGATGAGTGCATGTCATTTTCACCTCACTTTGCACCTCCTCTGTCTGCATTCACAACATCATCACATAGTTTGATTGCTGATAGTGGGATAAGATTTATGTGCATTGTTGAAGATATATTGGAACAGTTGACCCCTTTGATCATTTTGCATTTTGGTGGAAACATACTGAGTAGGATCGGACAACTTTTTGATAAATACATGGATGCTTTAATTAAAGCCCTACCAGGTCCATCTGATGATGACAGTCTTACTGAGCTCAAGGAGTTTGTATCTTTTAGAGCTGAAACAGATTCAGAACAGCTTGCCCTTTTGGGAGTTGCATTTACCATCTTGGATGAACTACTGCCGAATGCTGTAATGACCCTCTGGAAGCAGCAGACTGAAAGTGGGGAACCAAAAAGTGGACTTGCTGAAAATGTCACACCTATTCCAAGTACTTCTGCAGAGTTAAAGGATTGGAAGCGTCGTCTTCAGCATTCATTTGACAAGCTAAGAGACCATTTCTGTCGGCAATATGTCTTGAGCTTCATTTATTCAAGAGAAGGACAGACACGACTGGATGCCCAAATATATTTAAATGGGAATGGTGATGATTTGTATTGGGACTCAGCCCCTTTGCCTTCGCTTCCATTTCAGGCATTATTTGCAAAGCTGCAGCAATTAGCAACCGTGGCTGGAGATGTGTTACTTGGAAAAGAGAGAATTCAGAAAATTTTGCTTGCTAGGATAACCGAGACAGTTGTAATGTGGTTGTCCGATGAACAAGAGTTTTGGGCTGTGTTTGAGGATGATACAGGTCCTCTTCAGCCACTTGGGTTGCAGCAGTTAATTCTTGATATGCACTTCACTGTTGAAATTGCACGTTTTGCGGGTTACCCATCAAGGCATGTGCACCAGATTGCATCAGCTATAATTGCTCGTGCTATCAGGGCTTTTTCTGCTAGAGGCATAGAAGTACAAAGTGCACACTCCGAGGATGAGTGGTTTGTTGAAACTGCAAAGTCAGCGATAAATAAACTACTTTTGGGAGCAGAAGGGTCAGAGACATCCGAGATTGATGAAGATAACATCGCTCTTCATGATGTATTGGATTCAGATGATTCTGTCTCTTCCCTTTCAAGTATAGATTCTTCGGAGTCTTTTGCCTCTGCAAGTATGGGTGAACTTGACAGTCCAAAGCATTTCGACGATTCAGGGGGTTGAAAACTTTTTCCCGCCCATCAGAAGGAAACAATAAAAAGGGAGGTTGTTTCGTAGGAAGTATGTTGACAATGTTCTTGTAGCATTATGAAATTATTAAAATTAGTGTACATTGTGGTATTGTTATATGAAAAGCAGGTCACAGACTTACAAGCATGTCGCAAAGAGTAAAGGCTGTTTGAATTCTTCCCAGGGGCCTAATCCGTAGCTTTAGTATCACCGGCATAGCCGGAGCCAATCTTCTTAGGCATTACAACTAGAGCACCTTAGCAATGCAACTCATGGTAGGCTAGATTACGTTCTTTTTCCTTTTGCCCCGGCCAGAGTTGTTCAGTAGCGATTCATCGCTCTTCCAAATGATCTTCTCCGGTCCGGGAACACAAAAGATTTTGAGTTAA

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT1G10180.1	1	-
Pyrus communis	PCP020251.1	1	-
Pyrus x bretschneideri	Pbr031479.1	1	-
Rubus occidentalis	Ro03_G10857	1	-
Vitis vinifera	GSVIVT01012095001	1	-
Solanum lycopersicum	Solyc02g069080.2.1	1	-
Populus trichocarpa	Potri.015G118500.1	1	-
Nicotiana benthamiana	Niben101Scf02174g03011.1	1	exocyst complex component 84B LENGTH=814
Oryza sativa	LOC_Os07g38060.1	1	expressed protein
Zea mays	GRMZM2G006942_P01	1	BEST Arabidopsis thaliana protein match is: exocyst complex component 84B (TAIR:AT5G49830.1); Has 132 Blast hits to 132 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 117; Viruses - 0; Other Eukaryotes - 8 (source /.../ BLink).

Gene Ontology

GO term	Description	Category
--	--	--

KEGG

KO	Description	Enzyme
K19986	exocyst complex component 8	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16528.1	Exo84_C	135	338	2.60E-09

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	19.1485
SRR5252888	dormant buds	no	dormant buds(0 month)	24.5378
SRR5252889	dormant buds	no	dormant buds(0 month)	30.1247
SRR5252886	dormant buds	no	dormant buds(1 months)	22.285
SRR5252887	dormant buds	no	dormant buds(1 months)	16.1451
SRR5252884	dormant buds	no	dormant buds(2 months)	16.723
SRR5252882	dormant buds	no	dormant buds(3 months)	18.236
SRR5252883	dormant buds	no	dormant buds(3 months)	21.0342
SRR5252880	dormant buds	no	dormant buds(4 months)	24.7126
SRR5252881	dormant buds	no	dormant buds(4 months)	23.106
SRR5252878	bud break	no	bud break	30.6165
SRR5252879	bud break	no	bud break	26.1855
SRR3744766	flower	no	mature	4.90452
SRR3744767	flower	no	mature	4.76916
SRR3744768	flower	no	mature	4.9914
SRR6308190	stigmas	no	open flowers	8.83616
SRR6308181	styles	no	open flowers	8.66037
SRR6308188	filaments	no	open flowers	10.7086
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	2.73537
SRR6308192	pollen	no	open flowers	0.369371
SRR6308191	petals	no	open flowers	6.7943
SRR6308194	sepals	no	open flowers	5.01621
SRR6308193	receptacles	no	open flowers	10.044
SRR6308189	ovaries	no	open flowers	11.7588
SRR3384922	fruit	no	1 week after full bloom	8.50678
SRR3384921	fruit	no	2 week after full bloom	9.91876
SRR3384920	fruit	no	3 week after full bloom	11.6448
SRR3384919	fruit	no	4 week after full bloom	12.2663
SRR3384923	fruit	no	5 week after full bloom	11.3305
SRR3384918	fruit	no	6 week after full bloom	9.5796
SRR3384917	fruit	no	8 week after full bloom	9.71975
SRR3384916	fruit	no	10 week after full bloom	12.3024
SRR3384915	fruit	no	12 week after full bloom	12.5778
SRR3384914	fruit	no	14 week after full bloom	11.9696
SRR3384913	fruit	no	16 week after full bloom	11.6698
SRR3384912	fruit	no	18 week after full bloom	12.4708
SRR3384911	fruit	no	19 week after full bloom	10.5645
SRR3384910	fruit	no	20 week after full bloom	13.9288
SRR768128	whole fruit	no	25 days post anthesis	16.6629
SRR768129	whole fruit	no	35 days post anthesis	9.37599
SRR768130	whole fruit	no	60 days post anthesis	15.7197
SRR768131	whole fruit	no	87 days post anthesis	20.8498
SRR7343308	immature fruit flesh	no	immature	13.3126
SRR7343309	immature fruit flesh	no	immature	13.7811
SRR6320494	ripe fruit flesh	no	mature	14.0935
SRR5405143	ripe fruit peel	no	mature	16.3236
SRR6320572	ripe fruit peel	no	mature	9.60642
SRR7403504	fruit	uninfected	mature	16.0315
SRR7403506	fruit	uninfected	mature	14.772
SRR7403507	fruit	uninfected	mature	15.2697
SRR7403500	fruit	infected with penicillium expansum	mature	0.943553
SRR7403501	fruit	infected with penicillium expansum	mature	0.547909
SRR7403508	fruit	infected with penicillium expansum	mature	1.44827
SRR7403502	fruit	infected with penicillium expansum	mature	1.83228
SRR7403503	fruit	infected with penicillium expansum	mature	1.70542
SRR7403505	fruit	infected with penicillium expansum	mature	1.46484
SRR1613973	Central seeds	no	20DAPF	13.2579
SRR1613974	Central seeds	no	20DAPF	14.2941
SRR1613975	Central seeds	no	20DAPF	11.1942
SRR1613976	Lateral seeds	no	20DAPF	14.0392
SRR1613977	Lateral seeds	no	20DAPF	11.6877
SRR1613978	Lateral seeds	no	20DAPF	13.036
SRR3744786	stem	no	mature	7.34725
SRR3744787	stem	no	mature	7.62513
SRR3744772	stem	no	mature	7.22057
SRX765691	seedling shoot apex	no	4-6 week old seedling	23.4064
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	25.8752
SRR1089478	leaf	Virus-free	plantlets	8.20401
SRR1089477	leaf	ASGV-infected	plantlets	9.48159
SRR767660	leaf	uninfected	fully developed	5.3643
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	2.47812
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	8.1161
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	7.21723
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	6.31684
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	3.13388
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	9.58723
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	7.12349
SRR6308182	young leaf	no	immature leaves	16.6306
SRR3744769	leaf	no	mature	5.27161
SRR3744770	leaf	no	mature	5.12403
SRR3744771	leaf	no	mature	5.49255
SRR5405145	leaf	no	mature	3.91299
SRR6320561	leaf	no	mature	4.99272