Gene detail

Detail information of MD05G1303200 Annotation

Gene ID	Annotation
MD05G1303200	Ribosomal protein L34

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0902	structural constituent of ribosome chloroplast thylakoid membrane ribosome chloroplast stroma translation iron-sulfur cluster assembly ribosome biogenesis plastid large ribosomal subunit 30S ribosomal protein 3 large subunit ribosomal protein L19 large subunit ribosomal protein L34 stomatal complex morphogenesis large subunit ribosomal protein L7/L12 thylakoid membrane organization photosystem I assembly nucleoid plastid translation isopentenyl diphosphate biosynthetic process chloroplast envelope

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD05G1303200	mRNA	Chr05	43585095	43586430	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Solanum lycopersicum	Solyc01g056780.2.1	1	Ribosomal protein L34
Nicotiana benthamiana	Niben101Scf10328g00024.1	1	50S ribosomal protein L34
Nicotiana benthamiana	Niben101Scf00207g05027.1	0.839	50S ribosomal protein L34
Oryza sativa	LOC_Os01g59060.1	1	"50S ribosomal protein, putative, expressed"
Zea mays	GRMZM2G042492_P01	1	Ribosomal protein L34

Gene Ontology

GO term	Description	Category
GO:0003735	structural constituent of ribosome	molecular_function
GO:0005840	ribosome	cellular component
GO:0006412	translation	biological_process

KEGG

KO	Description	Enzyme
K02914	large subunit ribosomal protein L34	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	87.9681
SRR5252888	dormant buds	no	dormant buds(0 month)	4.67174
SRR5252889	dormant buds	no	dormant buds(0 month)	2.88638
SRR5252886	dormant buds	no	dormant buds(1 months)	4.74762
SRR5252887	dormant buds	no	dormant buds(1 months)	2.94337
SRR5252884	dormant buds	no	dormant buds(2 months)	4.70057
SRR5252882	dormant buds	no	dormant buds(3 months)	9.09209
SRR5252883	dormant buds	no	dormant buds(3 months)	5.87104
SRR5252880	dormant buds	no	dormant buds(4 months)	3.36073
SRR5252881	dormant buds	no	dormant buds(4 months)	5.78192
SRR5252878	bud break	no	bud break	7.69899
SRR5252879	bud break	no	bud break	15.2187
SRR3744766	flower	no	mature	13.5253
SRR3744767	flower	no	mature	12.5952
SRR3744768	flower	no	mature	14.1584
SRR6308190	stigmas	no	open flowers	8.00565
SRR6308181	styles	no	open flowers	9.05345
SRR6308188	filaments	no	open flowers	1.33992
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	1.36902
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	3.69561
SRR6308194	sepals	no	open flowers	14.8877
SRR6308193	receptacles	no	open flowers	5.49385
SRR6308189	ovaries	no	open flowers	7.12763
SRR3384922	fruit	no	1 week after full bloom	57.242
SRR3384921	fruit	no	2 week after full bloom	40.9659
SRR3384920	fruit	no	3 week after full bloom	75.4488
SRR3384919	fruit	no	4 week after full bloom	41.1001
SRR3384923	fruit	no	5 week after full bloom	39.7461
SRR3384918	fruit	no	6 week after full bloom	33.9559
SRR3384917	fruit	no	8 week after full bloom	44.1425
SRR3384916	fruit	no	10 week after full bloom	30.1887
SRR3384915	fruit	no	12 week after full bloom	28.8687
SRR3384914	fruit	no	14 week after full bloom	28.3149
SRR3384913	fruit	no	16 week after full bloom	15.4641
SRR3384912	fruit	no	18 week after full bloom	13.638
SRR3384911	fruit	no	19 week after full bloom	13.2482
SRR3384910	fruit	no	20 week after full bloom	10.7668
SRR768128	whole fruit	no	25 days post anthesis	19.7577
SRR768129	whole fruit	no	35 days post anthesis	15.0845
SRR768130	whole fruit	no	60 days post anthesis	15.5901
SRR768131	whole fruit	no	87 days post anthesis	2.60773
SRR7343308	immature fruit flesh	no	immature	6.54329
SRR7343309	immature fruit flesh	no	immature	8.41555
SRR6320494	ripe fruit flesh	no	mature	3.50192
SRR5405143	ripe fruit peel	no	mature	7.39243
SRR6320572	ripe fruit peel	no	mature	9.63855
SRR7403504	fruit	uninfected	mature	9.3106
SRR7403506	fruit	uninfected	mature	8.82419
SRR7403507	fruit	uninfected	mature	9.27671
SRR7403500	fruit	infected with penicillium expansum	mature	0.224895
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0.558032
SRR7403503	fruit	infected with penicillium expansum	mature	0.207759
SRR7403505	fruit	infected with penicillium expansum	mature	0.747001
SRR1613973	Central seeds	no	20DAPF	3.43191
SRR1613974	Central seeds	no	20DAPF	3.37739
SRR1613975	Central seeds	no	20DAPF	4.80162
SRR1613976	Lateral seeds	no	20DAPF	4.77768
SRR1613977	Lateral seeds	no	20DAPF	3.88072
SRR1613978	Lateral seeds	no	20DAPF	3.63738
SRR3744786	stem	no	mature	16.0409
SRR3744787	stem	no	mature	18.084
SRR3744772	stem	no	mature	17.5859
SRX765691	seedling shoot apex	no	4-6 week old seedling	9.09587
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	10.2089
SRR1089478	leaf	Virus-free	plantlets	20.6079
SRR1089477	leaf	ASGV-infected	plantlets	23.8622
SRR767660	leaf	uninfected	fully developed	48.0654
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	76.149
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	57.3447
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	35.1706
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	11.6778
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	19.8046
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	25.8425
SRR6308182	young leaf	no	immature leaves	15.4844
SRR3744769	leaf	no	mature	39.7545
SRR3744770	leaf	no	mature	37.2813
SRR3744771	leaf	no	mature	42.3207
SRR5405145	leaf	no	mature	50.9594
SRR6320561	leaf	no	mature	54.52