Gene detail

Detail information of MD05G1331400 Annotation

Gene ID	Annotation
MD05G1331400	S-locus lectin protein kinase family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0386	spindle assembly involved in meiosis protein SMG7 nuclear-transcribed mRNA catabolic process cytoplasmic mRNA processing body meiotic nuclear division Kip1 ubiquitination-promoting complex protein 1 [EC:2.3.2.27] cellular process regulating host cell cycle in response to virus phospholipid-translocating ATPase [EC:3.6.3.1] proteolysis involved in cellular protein catabolic process

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD05G1331400	mRNA	Chr05	45538638	45542118	+

Sequences

CDS:

MD05G1331400

CCGAAAGTGCTTTTAGTGCTATGAATTCCTCCATGTTCTTCCTATTGTTCTTAAGCTTGCTTTTGACACAGCATTATTGTGCTGAGGTATATAACATAACTTCTTTGCAACCATTAGCGCAGGGACAAACTCTTTTCTCCCCCAGCCACATTTTCGAATTGGGTTTCTTCAGCCCCAACAATTCCGAAAATAAGTATGTGGGAATATGGCACAAGAATATGTTTCCTCGCAAAGTTGTGTGGGTTGCCAACAGAGAAAAGCCGCTTGCAGTTGCAGACGCCTTGGCTAGTTTAGCGATTAACAATGGGAAACTTGAGCTTGTAGATGGGAAACAGAAATCTATATGGTCAATCAATATTCCGGAGTCATCGTATAGCTCAGCTGCAGTTCTTTTAGACACTGGAAACCTCGTTGTTGCGGATGATAGAGGAGCTCAATTATGGAAGAGCTTTGATTATCCTGGTGACACATTTCTTCCTGGAATGTTGATGGGATTTGATAGTCAATCTGGAAAGCAGAATGTCTTGACTGCCTGGAAAAATTTGAACGATTCATCAAGAGGGTTATTCTTGGTTGAATTGGCACCACAGATCCCAGCTCAGATATTCGTTCGGATTAACGGATCAACTCCCTGCTGGAGAAGCGGTCCATGGGATAAATCAAAGTTCATAGGCATACCCGAAATGGATGATCAATATCTTAGTGGTCATATGGTGCTTGATTATGAGCAACAGGGAGCAGCGTCCTTTTTCTGCAGTAGTGCATATAACAAAAGTTTGGTATATATGGATATCTCTTCAAACGGTAGACTGAAGACTATGGTATCGGAACATGGTGAGAACTGGCGTATTAACTGGGAGGCCCAAAGGACTCCATGCGACTATTATGGAACATGTGGACCTTTTGGGGTTTGCAAAGTTACTGATTCTCTAACAACTCCAATCTGCAAGTGTTTGAAAGGGTTCGTACCCAAGTCACTTGAGGAATGGAGTAAGGGAAACACGACAGGAGGGTGCGTGAGGAAAGCCAAATTGTTTTGTGAGAGTAACACAAGTCAGCCAGTTGCTTCAGGAGGAAAAGAAGACGGGTTTCTAAAAATAGAAAGCGTAAACCCACCAGATTTTCATGAGTATATTTTGAATATGGATTTTCAAGGCTGCAGGACTCAGTGCCAAAATAATTGTTCTTGCCTGGCTTATGCATTTGTTACCAATATAGGTTGTTTAATCTGGTCCCAGGACCTTTTAGATATTCAGCAGTTTTCCACTGGCGGAGTGGATCTCTTTATTCGCCTAGCTGATGCCGAATTTGGCGAAGGAAAGCGAACAAAGTTAATTGTCAGCCTTACATCTATATGTTTTATCAGTATTGCTGCAGTAGTGTTCGGTTTGCACAGGTTACGCGCTAAACAAAAGGGAAACATCAAAGTAACAACAATGCGCAGTGAATTGAATGACATGACTAAGAATTCAAGGGACACTATCGAAGAACTTATAAGAAAACATGATCCATCAGAGCTTATAATCTATGATCTTGATAGCATATTAATTGCTACGAGCAATTTCAGCATCAACAACAAACTTGGGGGAGGAGGATTTGGCCCCGTTTACAAGGGAAAGCTACAAGAAGGGAAGGAAATAGCAGTAAAAAGACTGTCTAGTAGCTCGGGGCAAGGCATAGAAGAGTTCAAGAATGAAGTGATGTTGATCTCTAAACTCCAACATAAAAATCTTGTTAGGATCATGGGTTGCTGCATTAAAGATGACGAGAAGTTATTGATCTATGAGTTCATGCCAAACAGAAGCTTGGATACTCTTCTATTCGATCCAATGAGAAGAGGAGTGCTTGATTGGGCTAAACGCTTCAATATTATTCAAGGTGTCGCTAGAGGACTTCTTTATCTCCATCATGATTCCTGTTTGAAGGTAATACATAGAGATTTGAAGGTCAGTAATATTCTCTTGGATGAGAATATGAACCCGAAAATTTCAGATTTTGGACTGGCACGCATTGTTCAAGGGACGCATAATTTAGAAAACACTCAGAAGGTGGTGGGAACTCTTGGCTATATGTCTCCGGAGTATGCCATGAGAGGGATATTTTCTGAAAAATCCGATGTCTATAGCTTTGGGGTCTTGCTATTGGAGATTATTGCCGGCAGAAAGAATACCAGCTCCTTTTACAAGGAACAAGAGCTAGGTATCCTAGCTTATGCATGGAACTTATGGAATGAAGGCAAGGGATTGGACTTTGTAGATGAAGTATTGGCAGATTCATATTCGGCATCAGAAGTGATGAGATGCATGCATATCGGGCTTCTTTGCGTGCAAAACAATGCTGCAGATAGGCCAACAATTGCAGATGTGGTTTTCATGCTAAGGAGCGAGACAGATTGTGCGCAGCCTAAGCAGCCTACATTCACCTTCCAAAACTCTCTATCTGATCTTCAACCACACCATAACCATGTTTGGTCTGCAAATGAAGCCACCATATCACTTCTCGAAGGACGATAGTAAAAGAATACGTGTTAAAAGAGAACATCCCCAGCTCATTGAAGTCCCTACTCAAATTTACAAGTCAAAAGTCAGAGCGCTGCACTATCTAGAATATCTAAATAAATCTCTTAAGATTGTTGTCATGGAATGTTAGTGAAAAATCTAGAAACAAACCACACGTGGTTGGGCAAAGGAATAATTTTTGCTACAATCACCCTGCAAAGTGTTGATTTCATGATGCTTCAACCACCCTAATTTCATTACCATTAGATGTAATTTA

Protein:

Gene family

Gene family	Subfamily
Protein Kinases Family	PPC:1.7.2

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Prunus persica	Prupe.4G032900.1.p	1	S-locus lectin protein kinase family protein
Pyrus communis	PCP020908.1	1	-

Gene Ontology

GO term	Description	Category
GO:0004674	protein serine/threonine kinase activity	molecular_function
GO:0005524	ATP binding	molecular_function
GO:0004713	protein tyrosine kinase activity	molecular_function
GO:0006468	protein phosphorylation	biological_process
GO:0048544	recognition of pollen	biological_process

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01453.20	B_lectin	71	174	6.60E-26
PF00954.16	S_locus_glycop	206	319	2.40E-26
PF08276.7	PAN_2	352	411	1.60E-16
PF07714.13	Pkinase_Tyr	516	783	7.70E-49

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	0.256994
SRR5252888	dormant buds	no	dormant buds(0 month)	2.07433
SRR5252889	dormant buds	no	dormant buds(0 month)	1.76887
SRR5252886	dormant buds	no	dormant buds(1 months)	2.9278
SRR5252887	dormant buds	no	dormant buds(1 months)	4.12297
SRR5252884	dormant buds	no	dormant buds(2 months)	5.90111
SRR5252882	dormant buds	no	dormant buds(3 months)	4.42329
SRR5252883	dormant buds	no	dormant buds(3 months)	3.97135
SRR5252880	dormant buds	no	dormant buds(4 months)	1.8031
SRR5252881	dormant buds	no	dormant buds(4 months)	2.31192
SRR5252878	bud break	no	bud break	0.805075
SRR5252879	bud break	no	bud break	0.686724
SRR3744766	flower	no	mature	0.58118
SRR3744767	flower	no	mature	0.394804
SRR3744768	flower	no	mature	0.485245
SRR6308190	stigmas	no	open flowers	0.14957
SRR6308181	styles	no	open flowers	0.515198
SRR6308188	filaments	no	open flowers	0.257332
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	2.06183
SRR6308192	pollen	no	open flowers	13.958
SRR6308191	petals	no	open flowers	0.110138
SRR6308194	sepals	no	open flowers	0.373539
SRR6308193	receptacles	no	open flowers	0.383059
SRR6308189	ovaries	no	open flowers	0.622921
SRR3384922	fruit	no	1 week after full bloom	0.262435
SRR3384921	fruit	no	2 week after full bloom	0.126253
SRR3384920	fruit	no	3 week after full bloom	0.472464
SRR3384919	fruit	no	4 week after full bloom	0.205406
SRR3384923	fruit	no	5 week after full bloom	0.317426
SRR3384918	fruit	no	6 week after full bloom	0.706722
SRR3384917	fruit	no	8 week after full bloom	0.431676
SRR3384916	fruit	no	10 week after full bloom	0.713723
SRR3384915	fruit	no	12 week after full bloom	0.663512
SRR3384914	fruit	no	14 week after full bloom	0.672762
SRR3384913	fruit	no	16 week after full bloom	0.551236
SRR3384912	fruit	no	18 week after full bloom	0.484974
SRR3384911	fruit	no	19 week after full bloom	0.279088
SRR3384910	fruit	no	20 week after full bloom	0.242798
SRR768128	whole fruit	no	25 days post anthesis	0.808799
SRR768129	whole fruit	no	35 days post anthesis	0.231699
SRR768130	whole fruit	no	60 days post anthesis	0.258977
SRR768131	whole fruit	no	87 days post anthesis	0.487336
SRR7343308	immature fruit flesh	no	immature	1.20496
SRR7343309	immature fruit flesh	no	immature	1.20174
SRR6320494	ripe fruit flesh	no	mature	0.661825
SRR5405143	ripe fruit peel	no	mature	1.5334
SRR6320572	ripe fruit peel	no	mature	0.144269
SRR7403504	fruit	uninfected	mature	0.632314
SRR7403506	fruit	uninfected	mature	0.582313
SRR7403507	fruit	uninfected	mature	0.569386
SRR7403500	fruit	infected with penicillium expansum	mature	2.63994
SRR7403501	fruit	infected with penicillium expansum	mature	3.04703
SRR7403508	fruit	infected with penicillium expansum	mature	2.869
SRR7403502	fruit	infected with penicillium expansum	mature	3.0153
SRR7403503	fruit	infected with penicillium expansum	mature	2.70977
SRR7403505	fruit	infected with penicillium expansum	mature	2.47055
SRR1613973	Central seeds	no	20DAPF	0.192079
SRR1613974	Central seeds	no	20DAPF	0.311912
SRR1613975	Central seeds	no	20DAPF	0.187303
SRR1613976	Lateral seeds	no	20DAPF	0.205585
SRR1613977	Lateral seeds	no	20DAPF	0.164007
SRR1613978	Lateral seeds	no	20DAPF	0.114128
SRR3744786	stem	no	mature	0.664326
SRR3744787	stem	no	mature	0.735734
SRR3744772	stem	no	mature	0.864862
SRX765691	seedling shoot apex	no	4-6 week old seedling	0.104788
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	0.679784
SRR1089478	leaf	Virus-free	plantlets	0.0562383
SRR1089477	leaf	ASGV-infected	plantlets	0.0436235
SRR767660	leaf	uninfected	fully developed	0.171218
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0.165774
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0.66991
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0.346593
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0.218274
SRR6308182	young leaf	no	immature leaves	0.429066
SRR3744769	leaf	no	mature	0.394423
SRR3744770	leaf	no	mature	0.542107
SRR3744771	leaf	no	mature	0.280617
SRR5405145	leaf	no	mature	0.799381
SRR6320561	leaf	no	mature	0.147801