Gene detail

Detail information of MD05G1356700 Annotation

Gene ID	Annotation
MD05G1356700	Uncharacterised protein family (UPF0041)

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0316	phospholipase activator activity ADP-ribosylation factor 1 mitochondrial respiratory chain complex I NADH dehydrogenase (ubiquinone) flavoprotein 2 [EC:1.6.5.3 1.6.99.3] mitochondrial pyruvate carrier 2 small GTPase mediated signal transduction photorespiration singlet oxygen-mediated programmed cell death mitochondrial electron transport response to singlet oxygen

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD05G1356700	mRNA	Chr05	47230791	47232984	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT4G22310.1	1	Uncharacterised protein family (UPF0041)
Prunus persica	Prupe.4G012300.1.p	1	Uncharacterised protein family (UPF0041)
Pyrus communis	PCP011693.1	1	-
Pyrus x bretschneideri	Pbr000078.1	1	-
Rubus occidentalis	Ro02_G34868	1	-
Fragaria vesca	mrna08657.1	1	Uncharacterised protein family (UPF0041)
Vitis vinifera	GSVIVT01002937001	1	Uncharacterised protein family (UPF0041)
Solanum lycopersicum	Solyc11g012080.1.1	1	Uncharacterised protein family (UPF0041)
Populus trichocarpa	Potri.011G023100.2	1	Uncharacterised protein family (UPF0041)
Nicotiana benthamiana	Niben101Scf03977g02005.1	1	Mitochondrial pyruvate carrier 2
Nicotiana benthamiana	Niben101Scf03209g00031.1	1	Mitochondrial pyruvate carrier 2
Oryza sativa	LOC_Os08g25590.2	0.821	"UPF0041 domain containing protein, putative, expressed"
Oryza sativa	LOC_Os07g26700.1	1	"UPF0041 domain containing protein, putative, expressed"
Zea mays	GRMZM2G003642_P01	1	-
Zea mays	GRMZM2G043749_P01	1	Brain protein 44; Brain protein 44 isoform 1; Brain protein 44 isoform 2; Brain protein 44 isoform 3;

Gene Ontology

GO term	Description	Category
GO:0006850	mitochondrial pyruvate transport	biological_process
GO:0005743	mitochondrial inner membrane	cellular component

KEGG

KO	Description	Enzyme
K22139	mitochondrial pyruvate carrier 2	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	98.7924
SRR5252888	dormant buds	no	dormant buds(0 month)	12.05
SRR5252889	dormant buds	no	dormant buds(0 month)	13.6684
SRR5252886	dormant buds	no	dormant buds(1 months)	10.2047
SRR5252887	dormant buds	no	dormant buds(1 months)	11.5235
SRR5252884	dormant buds	no	dormant buds(2 months)	3.78886
SRR5252882	dormant buds	no	dormant buds(3 months)	9.77148
SRR5252883	dormant buds	no	dormant buds(3 months)	5.02807
SRR5252880	dormant buds	no	dormant buds(4 months)	7.314
SRR5252881	dormant buds	no	dormant buds(4 months)	8.71959
SRR5252878	bud break	no	bud break	15.6492
SRR5252879	bud break	no	bud break	21.542
SRR3744766	flower	no	mature	27.0913
SRR3744767	flower	no	mature	25.6138
SRR3744768	flower	no	mature	28.2693
SRR6308190	stigmas	no	open flowers	35.5313
SRR6308181	styles	no	open flowers	51.6783
SRR6308188	filaments	no	open flowers	67.5514
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	60.2766
SRR6308192	pollen	no	open flowers	246.821
SRR6308191	petals	no	open flowers	59.989
SRR6308194	sepals	no	open flowers	30.5435
SRR6308193	receptacles	no	open flowers	53.5328
SRR6308189	ovaries	no	open flowers	54.766
SRR3384922	fruit	no	1 week after full bloom	103.579
SRR3384921	fruit	no	2 week after full bloom	135.367
SRR3384920	fruit	no	3 week after full bloom	122.827
SRR3384919	fruit	no	4 week after full bloom	137.086
SRR3384923	fruit	no	5 week after full bloom	95.5677
SRR3384918	fruit	no	6 week after full bloom	90.156
SRR3384917	fruit	no	8 week after full bloom	75.7711
SRR3384916	fruit	no	10 week after full bloom	63.9925
SRR3384915	fruit	no	12 week after full bloom	52.4486
SRR3384914	fruit	no	14 week after full bloom	49.7203
SRR3384913	fruit	no	16 week after full bloom	63.2171
SRR3384912	fruit	no	18 week after full bloom	39.8795
SRR3384911	fruit	no	19 week after full bloom	47.4397
SRR3384910	fruit	no	20 week after full bloom	29.313
SRR768128	whole fruit	no	25 days post anthesis	63.2464
SRR768129	whole fruit	no	35 days post anthesis	71.4574
SRR768130	whole fruit	no	60 days post anthesis	40.0283
SRR768131	whole fruit	no	87 days post anthesis	22.7553
SRR7343308	immature fruit flesh	no	immature	37.6311
SRR7343309	immature fruit flesh	no	immature	60.1865
SRR6320494	ripe fruit flesh	no	mature	4.25538
SRR5405143	ripe fruit peel	no	mature	13.981
SRR6320572	ripe fruit peel	no	mature	8.46586
SRR7403504	fruit	uninfected	mature	13.7
SRR7403506	fruit	uninfected	mature	13.8783
SRR7403507	fruit	uninfected	mature	12.9534
SRR7403500	fruit	infected with penicillium expansum	mature	61.5558
SRR7403501	fruit	infected with penicillium expansum	mature	63.8624
SRR7403508	fruit	infected with penicillium expansum	mature	62.9379
SRR7403502	fruit	infected with penicillium expansum	mature	38.5977
SRR7403503	fruit	infected with penicillium expansum	mature	34.891
SRR7403505	fruit	infected with penicillium expansum	mature	37.8465
SRR1613973	Central seeds	no	20DAPF	49.1349
SRR1613974	Central seeds	no	20DAPF	45.4647
SRR1613975	Central seeds	no	20DAPF	50.1016
SRR1613976	Lateral seeds	no	20DAPF	49.2201
SRR1613977	Lateral seeds	no	20DAPF	48.6097
SRR1613978	Lateral seeds	no	20DAPF	46.057
SRR3744786	stem	no	mature	12.526
SRR3744787	stem	no	mature	12.8909
SRR3744772	stem	no	mature	14.3442
SRX765691	seedling shoot apex	no	4-6 week old seedling	41.8993
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	54.0026
SRR1089478	leaf	Virus-free	plantlets	16.922
SRR1089477	leaf	ASGV-infected	plantlets	14.0638
SRR767660	leaf	uninfected	fully developed	23.5041
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	31.8135
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	30.5957
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	72.7806
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	24.9802
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	9.52116
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	23.4246
SRR6308182	young leaf	no	immature leaves	66.4043
SRR3744769	leaf	no	mature	14.3256
SRR3744770	leaf	no	mature	14.9922
SRR3744771	leaf	no	mature	14.0564
SRR5405145	leaf	no	mature	35.0792
SRR6320561	leaf	no	mature	38.0014