Gene detail

Detail information of MD05G1358600 Annotation

Gene ID	Annotation
MD05G1358600	tonoplast dicarboxylate transporter

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD05G1358600	mRNA	Chr05	47386800	47390796	+

Sequences

CDS:

MD05G1358600

GCATGTATAAAAGCACCATTTCCTAACCAAGTCATTTCCTAAATCGATTCCAACATCAATAACATGGATCATCATCCAGTCTCCGACGACCCCAAAACTCCACTTCTCCCTCTCCACGATAAAATCCAACGGTCGCAGAGCTTCCATTCATCCTTGAAATCCCTTCTAACACTCAAGAACTTCTTCGTCCTCCTGGGACCTCTTCTGTGCACCATCATATGCCTCTGTGTGAAGCTAGATGGCCCGGTGGCCAGCCGGAACATGTTGGCGGTGCTGGTGTGGGTGTTTGCTTGGTGGGTCACGGAGGCCGTGCCCATGCCAATTACCTCCATGTCCCCACTCTTTCTCTTCCCTCTCTTTGGAATATCCTCTGCTGATGATGTTGCTCAATCTTACATGGATGATGTTATTGCCCTTGTTCTTGGAAGCTTTATATTGGCTCTTGCTGTTGAGCATTATAACATCCACAGAAGATTGGCCTTGAATATAACCATGCTCTTCTGCGGAGACCCGCTGAGTCCTCCCCTGCTCCTACTGGGAATATGCGCCACGACAGCATTCGTCTCCATGTGGATGCACAACGTGGCGGCAGCTGTGATAATGATGCCGGTGGCCACTGGGATCCTCCAGCGCTTTCCGGTGTGTCCGGACCAGTCCGTTGCCGAGAGCAAGTTCTGCAGGGCGGTGGTGCTGGGGGTGATATACTCCGCGGCCATAGGAGGGATGAGCACTCTCACTGGGACAGGTGTGAACTTGATATTGGTTGGGATGTGGAAGAGCTATTTTCCAGAGGCGAAGCCCATCAGCTTCAGCACCTGGTTCTTTCTAGGGTTCCCTCTGGCCTTGTTGATATTCTTGGCTTTGTGGGTTATACTTTGTTGCTTGTATTGCCCAAGGAATTCAGGCCAGGCTCTCTCTGCTTATCTGGACAAAGCTCACTTGAAGAGGGAGCTTGAAATGCTAGGTCCAATGGCTTTTGCTGAGAAGATGGTACTGGCTGTGTTTTCGATGCTGATAGTTTTGTGGATGACAAGGAGCATAACAGATGATATTCCTGGGTGGGGATCCCTCTTCAATGGGCGTGCTGGTGATGGAACTGTCAGTGTTATGATGGCAACTTTGCTGTTCATAATTCCAAACAAAAAGCAAGAGGGAGAGAAGTTGATGGACTGGAACAAATGCAAGAAGCTACCATGGAACATCATATTGTTACTAGGTGCTGGTTTTGCCATCGCCGACGGAGTCCGAACTAGCGGCCTTGCAGACATTTTATCTAAAGCCCTAGATTTCTTGGAGGCTGTCCCATATATGGCCATTGCGCCGGCTGTGTGTCTCATAAGTAGTACCATCACTGAGTTCACATCAAACAATGCCACCACCACTCTTGTTGTCCCTCTTTTGATTCAAATAGCCAAAAGCATGCATGTACATCCACTCCTCCTTATGATTCCAGGAGCCATTGGGGCACAGTTTTCTTTCTTGCTTCCGACCGGTACCCCTTCGAATATTGTAGGGTTTACCACTGGACACATTGAAATTCAAGACATGATTAAGACTGGATTGCCACTGAAGATTGCTGGAACTGTTGTGCTGTCCCTTCTGATGCCCACACTAGGAGCTTATGTATTTGGGACAAATGAACCTGCAGTTCAATGACTTTAGACAACAAGATGATACAAATATTCGCTCTTGGTAATTGGCAAAGAGGAGGTTTACGTGTATATACAGTCACATTGCAAGCGTACAGATACATGAGAAAAAGAAAGGAAAGAAAGCGACCAAAGGGCAACATATTACTTCTCTCTTCATTCCTTGTTTGGTAGAAAGCTTTGTGTGTATCTTGATTGCAGCCATATTATATTACATATGATAACTATGCTAGTTTGCCCGGAAATTCATTCGATTTGAGAAACCTGTCATTTCCTAGTTTGCATTTCTTGTCACGGGAGAAAAAAATAGTTAAAACTTGGCCACATCCAAAAAATAAATAAAACTCTCTATAGACATTGTCTTCCATTCACTAACCCCATTGACATATAAGGCCTCGTTTGGCAGCTCAGATTGTACTACATATTTATGCCGGATAGGATAAATAGTCACCGGATAGTACTGACTAAATTAGTCGGGC

Protein:

Gene family

Gene family	Subfamily
Transporter family	DASS

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT5G47560.1	1	ATSDAT;ATTDT;TDT\|TONOPLAST DICARBOXYLATE TRANSPORTER
Prunus persica	Prupe.4G009500.2.p	1	tonoplast dicarboxylate transporter
Prunus persica	Prupe.4G009500.1.p	0.63	tonoplast dicarboxylate transporter
Pyrus communis	PCP011708.1	1	-
Pyrus x bretschneideri	Pbr000058.1	1	-
Rosa multiflora	Rmu_sc0003749.1_g000019.1	1	-
Rosa multiflora	Rmu_sc0001706.1_g000004.1	1	-
Rubus occidentalis	Ro03_G10197	1	-
Vitis vinifera	GSVIVT01003326001	1	tonoplast dicarboxylate transporter
Solanum lycopersicum	Solyc11g012360.1.1	1	tonoplast dicarboxylate transporter
Populus trichocarpa	Potri.006G013900.1	1	tonoplast dicarboxylate transporter
Nicotiana benthamiana	Niben101Scf02002g01002.1	1	Tonoplast dicarboxylate transporter
Oryza sativa	LOC_Os09g31130.1	1	"citrate transporter, putative, expressed"
Zea mays	GRMZM2G176430_P01	1	-

Gene Ontology

GO term	Description	Category
GO:0016020	membrane	cellular component
GO:0055085	transmembrane transport	biological_process
GO:0005215	transporter activity	molecular_function
GO:0006814	sodium ion transport	biological_process

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	14.4094
SRR5252888	dormant buds	no	dormant buds(0 month)	1.04086
SRR5252889	dormant buds	no	dormant buds(0 month)	1.42907
SRR5252886	dormant buds	no	dormant buds(1 months)	4.70116
SRR5252887	dormant buds	no	dormant buds(1 months)	5.25663
SRR5252884	dormant buds	no	dormant buds(2 months)	14.3793
SRR5252882	dormant buds	no	dormant buds(3 months)	2.16742
SRR5252883	dormant buds	no	dormant buds(3 months)	7.03988
SRR5252880	dormant buds	no	dormant buds(4 months)	5.15815
SRR5252881	dormant buds	no	dormant buds(4 months)	9.00355
SRR5252878	bud break	no	bud break	10.1925
SRR5252879	bud break	no	bud break	6.89168
SRR3744766	flower	no	mature	73.7309
SRR3744767	flower	no	mature	74.9431
SRR3744768	flower	no	mature	74.0595
SRR6308190	stigmas	no	open flowers	3.72345
SRR6308181	styles	no	open flowers	4.17737
SRR6308188	filaments	no	open flowers	1.8883
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	1.86173
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	0.881054
SRR6308194	sepals	no	open flowers	3.13065
SRR6308193	receptacles	no	open flowers	3.17785
SRR6308189	ovaries	no	open flowers	6.08921
SRR3384922	fruit	no	1 week after full bloom	10.9254
SRR3384921	fruit	no	2 week after full bloom	19.344
SRR3384920	fruit	no	3 week after full bloom	19.3013
SRR3384919	fruit	no	4 week after full bloom	34.5979
SRR3384923	fruit	no	5 week after full bloom	39.4044
SRR3384918	fruit	no	6 week after full bloom	55.8682
SRR3384917	fruit	no	8 week after full bloom	66.1658
SRR3384916	fruit	no	10 week after full bloom	49.8333
SRR3384915	fruit	no	12 week after full bloom	28.6135
SRR3384914	fruit	no	14 week after full bloom	43.6031
SRR3384913	fruit	no	16 week after full bloom	86.256
SRR3384912	fruit	no	18 week after full bloom	49.8833
SRR3384911	fruit	no	19 week after full bloom	137.225
SRR3384910	fruit	no	20 week after full bloom	96.6564
SRR768128	whole fruit	no	25 days post anthesis	16.55
SRR768129	whole fruit	no	35 days post anthesis	45.5393
SRR768130	whole fruit	no	60 days post anthesis	55.0558
SRR768131	whole fruit	no	87 days post anthesis	85.814
SRR7343308	immature fruit flesh	no	immature	41.2442
SRR7343309	immature fruit flesh	no	immature	40.2242
SRR6320494	ripe fruit flesh	no	mature	10.6094
SRR5405143	ripe fruit peel	no	mature	31.8494
SRR6320572	ripe fruit peel	no	mature	28.842
SRR7403504	fruit	uninfected	mature	16.3053
SRR7403506	fruit	uninfected	mature	15.7354
SRR7403507	fruit	uninfected	mature	15.7189
SRR7403500	fruit	infected with penicillium expansum	mature	102.217
SRR7403501	fruit	infected with penicillium expansum	mature	97.8815
SRR7403508	fruit	infected with penicillium expansum	mature	100.717
SRR7403502	fruit	infected with penicillium expansum	mature	83.2457
SRR7403503	fruit	infected with penicillium expansum	mature	85.2133
SRR7403505	fruit	infected with penicillium expansum	mature	85.6243
SRR1613973	Central seeds	no	20DAPF	8.82012
SRR1613974	Central seeds	no	20DAPF	11.3418
SRR1613975	Central seeds	no	20DAPF	11.7418
SRR1613976	Lateral seeds	no	20DAPF	18.0799
SRR1613977	Lateral seeds	no	20DAPF	13.5945
SRR1613978	Lateral seeds	no	20DAPF	14.3356
SRR3744786	stem	no	mature	21.1678
SRR3744787	stem	no	mature	21.8008
SRR3744772	stem	no	mature	20.9869
SRX765691	seedling shoot apex	no	4-6 week old seedling	6.85888
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	5.06511
SRR1089478	leaf	Virus-free	plantlets	14.9546
SRR1089477	leaf	ASGV-infected	plantlets	20.169
SRR767660	leaf	uninfected	fully developed	49.4086
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	44.81
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	32.7765
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	8.864
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	14.2061
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	14.2167
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	8.26282
SRR6308182	young leaf	no	immature leaves	9.3903
SRR3744769	leaf	no	mature	62.8255
SRR3744770	leaf	no	mature	62.5419
SRR3744771	leaf	no	mature	64.2818
SRR5405145	leaf	no	mature	22.985
SRR6320561	leaf	no	mature	12.1321