Gene detail

Detail information of MD06G1005700 Annotation

Gene ID	Annotation
MD06G1005700	FKBP-like peptidyl-prolyl cis-trans isomerase family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0388	photosystem II assembly thylakoid membrane organization isopentenyl diphosphate biosynthetic process fused signal recognition particle receptor transcription from plastid promoter 30S ribosomal protein 3 large subunit ribosomal protein L10 chloroplast relocation peptidylprolyl isomerase [EC:5.2.1.8] stomatal complex morphogenesis regulation of protein dephosphorylation photosynthetic electron transport in photosystem II protein import into chloroplast thylakoid membrane rRNA processing SRP-dependent cotranslational protein targeting to membrane photosystem I assembly plastid translation protein peptidyl-prolyl isomerization

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD06G1005700	mRNA	Chr06	607998	609915	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT1G20810.1	1	FKBP-like peptidyl-prolyl cis-trans isomerase family protein
Prunus persica	Prupe.5G007000.2.p	1	FKBP-like peptidyl-prolyl cis-trans isomerase family protein
Prunus persica	Prupe.5G007000.1.p	0.961	FKBP-like peptidyl-prolyl cis-trans isomerase family protein
Pyrus x bretschneideri	Pbr015089.1	1	-
Rosa multiflora	Rmu_sc0015060.1_g000018.1	1	-
Rubus occidentalis	Ro05_G18634	1	-
Fragaria vesca	mrna31487.1	1	FKBP-like peptidyl-prolyl cis-trans isomerase family protein
Vitis vinifera	GSVIVT01013409001	1	FKBP-like peptidyl-prolyl cis-trans isomerase family protein
Solanum lycopersicum	Solyc04g082660.2.1	1	FKBP-like peptidyl-prolyl cis-trans isomerase family protein
Solanum lycopersicum	Solyc09g008650.2.1	1	FKBP-like peptidyl-prolyl cis-trans isomerase family protein
Populus trichocarpa	Potri.005G254900.1	1	FKBP-like peptidyl-prolyl cis-trans isomerase family protein
Nicotiana benthamiana	Niben101Scf01369g05024.1	1	FKBP-like peptidyl-prolyl cis-trans isomerase family protein LENGTH=232
Oryza sativa	LOC_Os02g02550.1	1	"peptidyl-prolyl cis-trans isomerase, FKBP-type, putative,expressed"

Gene Ontology

GO term	Description	Category
GO:0006457	protein folding	biological_process

KEGG

KO	Description	Enzyme
K01802	peptidylprolyl isomerase	EC:5.2.1.8

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00254.24	FKBP_C	115	235	6.40E-23

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	73.6963
SRR5252888	dormant buds	no	dormant buds(0 month)	1.44704
SRR5252889	dormant buds	no	dormant buds(0 month)	1.67632
SRR5252886	dormant buds	no	dormant buds(1 months)	0.735272
SRR5252887	dormant buds	no	dormant buds(1 months)	0.130242
SRR5252884	dormant buds	no	dormant buds(2 months)	2.70395
SRR5252882	dormant buds	no	dormant buds(3 months)	4.17217
SRR5252883	dormant buds	no	dormant buds(3 months)	1.47754
SRR5252880	dormant buds	no	dormant buds(4 months)	4.16386
SRR5252881	dormant buds	no	dormant buds(4 months)	5.54605
SRR5252878	bud break	no	bud break	3.73259
SRR5252879	bud break	no	bud break	6.32353
SRR3744766	flower	no	mature	3.59947
SRR3744767	flower	no	mature	4.09902
SRR3744768	flower	no	mature	4.67485
SRR6308190	stigmas	no	open flowers	1.95789
SRR6308181	styles	no	open flowers	1.11968
SRR6308188	filaments	no	open flowers	0.422261
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	1.30129
SRR6308192	pollen	no	open flowers	4.96422
SRR6308191	petals	no	open flowers	2.69823
SRR6308194	sepals	no	open flowers	14.8229
SRR6308193	receptacles	no	open flowers	1.66851
SRR6308189	ovaries	no	open flowers	1.12885
SRR3384922	fruit	no	1 week after full bloom	12.4035
SRR3384921	fruit	no	2 week after full bloom	7.82301
SRR3384920	fruit	no	3 week after full bloom	11.1702
SRR3384919	fruit	no	4 week after full bloom	10.3196
SRR3384923	fruit	no	5 week after full bloom	7.93289
SRR3384918	fruit	no	6 week after full bloom	9.37718
SRR3384917	fruit	no	8 week after full bloom	11.1723
SRR3384916	fruit	no	10 week after full bloom	4.69563
SRR3384915	fruit	no	12 week after full bloom	1.91929
SRR3384914	fruit	no	14 week after full bloom	4.11475
SRR3384913	fruit	no	16 week after full bloom	2.30785
SRR3384912	fruit	no	18 week after full bloom	0.758029
SRR3384911	fruit	no	19 week after full bloom	2.38884
SRR3384910	fruit	no	20 week after full bloom	0.325286
SRR768128	whole fruit	no	25 days post anthesis	6.79275
SRR768129	whole fruit	no	35 days post anthesis	6.17333
SRR768130	whole fruit	no	60 days post anthesis	3.0188
SRR768131	whole fruit	no	87 days post anthesis	1.94767
SRR7343308	immature fruit flesh	no	immature	5.20036
SRR7343309	immature fruit flesh	no	immature	6.34916
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	0.470107
SRR7403504	fruit	uninfected	mature	0.16225
SRR7403506	fruit	uninfected	mature	0.342788
SRR7403507	fruit	uninfected	mature	0.610504
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0
SRR7403503	fruit	infected with penicillium expansum	mature	0
SRR7403505	fruit	infected with penicillium expansum	mature	0
SRR1613973	Central seeds	no	20DAPF	0.318599
SRR1613974	Central seeds	no	20DAPF	0.278581
SRR1613975	Central seeds	no	20DAPF	0.24314
SRR1613976	Lateral seeds	no	20DAPF	0.554128
SRR1613977	Lateral seeds	no	20DAPF	0.346228
SRR1613978	Lateral seeds	no	20DAPF	0.378605
SRR3744786	stem	no	mature	2.83522
SRR3744787	stem	no	mature	1.8115
SRR3744772	stem	no	mature	1.89701
SRX765691	seedling shoot apex	no	4-6 week old seedling	9.86472
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	6.40645
SRR1089478	leaf	Virus-free	plantlets	17.5349
SRR1089477	leaf	ASGV-infected	plantlets	16.785
SRR767660	leaf	uninfected	fully developed	90.1727
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	246.754
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	107.444
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	48.8559
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	40.0158
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	20.8128
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	24.708
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	24.3518
SRR6308182	young leaf	no	immature leaves	12.9551
SRR3744769	leaf	no	mature	23.6198
SRR3744770	leaf	no	mature	19.799
SRR3744771	leaf	no	mature	21.6952
SRR5405145	leaf	no	mature	44.0042
SRR6320561	leaf	no	mature	48.3904