Gene detail

Detail information of MD06G1037600 Annotation

Gene ID	Annotation
MD06G1037600	NDR1/HIN1-like 8

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD06G1037600	mRNA	Chr06	4824526	4831076	+

Sequences

CDS:

MD06G1037600

CTCTGAAATATCTCCTGAGTCTCCCTCCCCTTCCATATAAAGAAAGCACAGAAACCCACACCTCAGTCTCCGTTTTTCCCACGACACCTCAGCCGCCCCTCTTTCTGTTTCTCTCTTCCTCTACCCCGGTAGACTAATTGCGAATCCGCCATGGGAAAGGACAGAGGAGGAGGTGGAAAACAAAAACTCCGACCTCCCAACGGTCCCGACTCACCTTCACTTCCTTCCTCCTCTTCTCAGCCAGAGAGGGTTGAACGCACCGCCTCCACAAGCTACTCCAAACCCCCAAATTTTATCCCAAACCCAAAGAAGCCTAGAAATCCTAATTGGGTTTCACGGAATCGGTGTGGCCCGCTGGTCAAACAGCAGTTTGTGAAGAAATCTGAGGTGGGTTCTTCCAACGATCAAGTGGGGTCTGGGCGTATTGTCGAGACAGCAACTGGGCAGCAAGAAGAACATGAAGAAAAGGAAGAAGAAGAAGAAAAAGAGAGAATCGCTATTGGTGTTGGTGTTGCGGGGGAAGACGTTGGGGTGTCGGATTCCAGAAAATCTCATGCGGATGATGATTATGATGTGGTGAGTAGATTGGAAGAGTTGCAGCTGGGTGTCCAAGAGCCCGAGTTGTCGGACGAGCAGATAAGGATCAATGATCAGGCTCAGGAGGATGAGTTGCTCGCTATGGAGTCCATTTATGGAGACCATTTTTGCATTTTTGAAAGACAAAGAGACCTTCGATCTTTTCAGATTCATATACACATTGAAACTCCTGGTGAAATTGCTGTTACTACAAAGTTGAATTCGTCGGATCATAAGACCAGAAGCAACAGTCCTGATGACTTCTCATATCCTTTCAATGTCCAGCATCTTCCAACAATTATATTGACGTGTATATTACCTAAATCATACCCAAGTCACCTACCACCTTATTTTTCAATATCTGTTCAGTGGCTGGATTCTAGTAAAATCTCCAATTTGTGTTCTATGCTGGATTCAATATGGACTGAACAATCAGGACAGGAGGTTATGTACCAATGGGTGGAATGGCTACAAAATTCTTCTCTCTCTTATCTGGGGTTTGATAAAGAAATAATTCTTGGTCCTTATGGTGTAAGGGCTGCTGTAGATAGACGTGCAGTTACAGGAAGTGTTTCTCCAGATGTTGATATTCCGGTTATTAAAAGTTACAACGATGATAAGCTACTTGAGAACTTTCACAATAATTTGCACGAGTGCTGCATCTGTTTCAGTGAGTATGCAGGCACTGAGTTTATCAGGCTACCATGCCGGCATTTCTTCTGTGGGGGATGCATGAAGACTTATTCCGACATGCATGTCAAGGAAGGCACCATACACAAACTGCAGTGTCCAGATGCAAAATGTGGGAGTATGATCCCACCAGGTTTGTTAAAACGATTGCTTGGTGATGAAGAGTTTGAACGATGGGATTCCTTAATGTTGACTAAAACACTAGAGTCAATGTCGGATGTCATGTACTGCCCAAGATGTGAAACTCCCTGCATAGTGGATGAAGACCAGCATGCCCAATGCGTAAAGTGCTTCTTTAGCTTTTGCACACTTTGCAGGGAGCGGCGGCATGTGGGTATTGAATGTATGACACCAGAGCTTAAGCTTCGTATCTTGCAGGAACGTCAGAGTTCATCTCAATTGAAAGATGATCAAAAGCGCAAAGAACTTGAGATGATCAATGAGGTTCTCAGTGTGAGGGAAATTCTTCGCGATGCAAAGCAATGCCCATCATGTAAGATGGCAATATCCAAAACTGGGGGCTGCAACAAGATGGTGTGTGAAAACTGTGGGCACTACTTCTGCTATCGCTGTGATAAGGAAATTGACGGATATGATCATTTCAGAGATGGTGCATGTGAACTATTCACACAAGAAGAAATTCAGAACTGGGAAGCACAGATGAATCCACGACAGGTTTTGGGTCAGATTCAAGCCCAACTCTTTGTTCAGAATGGTCAGGTGTGCCCTAATTGTCGTCAGTTTAATGCCAAGATTGGCAATAACAATCACATGTTCTGCTGGGCATGTCAAAACCACTATTGCTATTTGTGCAAGAAGATGGTGAGGCGAGGCTCTCATCATTACGGACCTAAAGGTTGCAAACAACACACGCAAGGATAGTTACCAACACAAACACACCATACCAGACTGCATTTCCCTGTTTCAGGGAATTTAACAGCCTCTCTTCATTTTTCTGCTCAAATTATTACGCTTCGTTTTGGCAAGGATATTCAATGTTGTACAGTATCTTATTCTGTTTTTCTCTCAAATTGGTCCGTTTTGGCCGACGAAACTTTTAGTTATTCTAAAATTTTCATGGGCTTTGATCAAAAATTGAAAACCAACAAGGTTTCAATCAAAGAATATTCATGGCTAGGA

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT1G32340.1	1	NHL8\|NDR1/HIN1-like 8
Prunus persica	Prupe.5G031400.1.p	1	NDR1/HIN1-like 8
Pyrus communis	PCP038948.1	1	-
Pyrus x bretschneideri	Pbr013855.3	1	-
Rosa multiflora	Rmu_sc0003807.1_g000003.1	1	-
Rubus occidentalis	Ro05_G07311	1	-
Fragaria vesca	mrna14040.1	1	NDR1/HIN1-like 8
Vitis vinifera	GSVIVT01013115001	1	NDR1/HIN1-like 8
Solanum lycopersicum	Solyc08g005150.2.1	1	NDR1/HIN1-like 8
Populus trichocarpa	Potri.001G139400.2	1	NDR1/HIN1-like 8
Nicotiana benthamiana	Niben101Scf01305g01004.1	1	E3 ubiquitin-protein ligase RNF14
Oryza sativa	LOC_Os02g46730.1	1	expressed protein
Oryza sativa	LOC_Os04g50720.1	1	"ara54-like RING finger protein, putative, expressed"
Zea mays	GRMZM2G342039_P01	1	-

Gene Ontology

GO term	Description	Category
GO:0008270	zinc ion binding	molecular_function
GO:0005515	protein binding	molecular_function

KEGG

KO	Description	Enzyme
K11971	E3 ubiquitin-protein ligase RNF14	EC:2.3.2.27

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05773.18	RWD	167	302	1.40E-23
PF01485.17	IBR	429	487	4.30E-10
PF01485.17	IBR	529	567	3.70E-08

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	9.42642
SRR5252888	dormant buds	no	dormant buds(0 month)	37.1612
SRR5252889	dormant buds	no	dormant buds(0 month)	27.0228
SRR5252886	dormant buds	no	dormant buds(1 months)	33.7796
SRR5252887	dormant buds	no	dormant buds(1 months)	31.8111
SRR5252884	dormant buds	no	dormant buds(2 months)	70.4701
SRR5252882	dormant buds	no	dormant buds(3 months)	47.6037
SRR5252883	dormant buds	no	dormant buds(3 months)	68.4096
SRR5252880	dormant buds	no	dormant buds(4 months)	43.4408
SRR5252881	dormant buds	no	dormant buds(4 months)	45.7583
SRR5252878	bud break	no	bud break	20.6212
SRR5252879	bud break	no	bud break	11.1926
SRR3744766	flower	no	mature	39.5199
SRR3744767	flower	no	mature	44.2797
SRR3744768	flower	no	mature	43.0058
SRR6308190	stigmas	no	open flowers	9.94429
SRR6308181	styles	no	open flowers	8.36066
SRR6308188	filaments	no	open flowers	5.85427
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	11.2461
SRR6308192	pollen	no	open flowers	24.2107
SRR6308191	petals	no	open flowers	11.3035
SRR6308194	sepals	no	open flowers	22.6542
SRR6308193	receptacles	no	open flowers	10.0767
SRR6308189	ovaries	no	open flowers	9.8873
SRR3384922	fruit	no	1 week after full bloom	4.3268
SRR3384921	fruit	no	2 week after full bloom	4.01969
SRR3384920	fruit	no	3 week after full bloom	4.70839
SRR3384919	fruit	no	4 week after full bloom	5.9998
SRR3384923	fruit	no	5 week after full bloom	9.67127
SRR3384918	fruit	no	6 week after full bloom	4.35091
SRR3384917	fruit	no	8 week after full bloom	11.5086
SRR3384916	fruit	no	10 week after full bloom	11.3768
SRR3384915	fruit	no	12 week after full bloom	14.5533
SRR3384914	fruit	no	14 week after full bloom	9.63756
SRR3384913	fruit	no	16 week after full bloom	10.9892
SRR3384912	fruit	no	18 week after full bloom	13.4481
SRR3384911	fruit	no	19 week after full bloom	16.2678
SRR3384910	fruit	no	20 week after full bloom	18.6095
SRR768128	whole fruit	no	25 days post anthesis	7.9675
SRR768129	whole fruit	no	35 days post anthesis	4.37475
SRR768130	whole fruit	no	60 days post anthesis	8.39329
SRR768131	whole fruit	no	87 days post anthesis	10.2449
SRR7343308	immature fruit flesh	no	immature	20.1153
SRR7343309	immature fruit flesh	no	immature	19.6627
SRR6320494	ripe fruit flesh	no	mature	31.2908
SRR5405143	ripe fruit peel	no	mature	19.2732
SRR6320572	ripe fruit peel	no	mature	21.8693
SRR7403504	fruit	uninfected	mature	37.8563
SRR7403506	fruit	uninfected	mature	39.8296
SRR7403507	fruit	uninfected	mature	39.2389
SRR7403500	fruit	infected with penicillium expansum	mature	23.9832
SRR7403501	fruit	infected with penicillium expansum	mature	26.6565
SRR7403508	fruit	infected with penicillium expansum	mature	25.7093
SRR7403502	fruit	infected with penicillium expansum	mature	22.144
SRR7403503	fruit	infected with penicillium expansum	mature	23.874
SRR7403505	fruit	infected with penicillium expansum	mature	26.2152
SRR1613973	Central seeds	no	20DAPF	5.61685
SRR1613974	Central seeds	no	20DAPF	5.92493
SRR1613975	Central seeds	no	20DAPF	5.47677
SRR1613976	Lateral seeds	no	20DAPF	5.86587
SRR1613977	Lateral seeds	no	20DAPF	6.49905
SRR1613978	Lateral seeds	no	20DAPF	6.84917
SRR3744786	stem	no	mature	41.2794
SRR3744787	stem	no	mature	39.4537
SRR3744772	stem	no	mature	43.6006
SRX765691	seedling shoot apex	no	4-6 week old seedling	9.30668
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	5.74392
SRR1089478	leaf	Virus-free	plantlets	14.0516
SRR1089477	leaf	ASGV-infected	plantlets	17.2664
SRR767660	leaf	uninfected	fully developed	6.3964
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	2.31856
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	7.54127
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	4.30308
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	24.493
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	13.1403
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	12.4018
SRR6308182	young leaf	no	immature leaves	5.75433
SRR3744769	leaf	no	mature	71.3205
SRR3744770	leaf	no	mature	69.2159
SRR3744771	leaf	no	mature	72.5644
SRR5405145	leaf	no	mature	51.3545
SRR6320561	leaf	no	mature	35.0108