Gene ID | Annotation |
---|---|
MD06G1038400 | Transcription elongation factor (TFIIS) family protein |
Network Category | Global Network | Conditional network (different tissues and developmental stages) |
---|---|---|
Coexpression Positive | Top300 PCC genelist | Top300 PCC genelist |
Coexpression Negative | Top300 PCC genelist | Top300 PCC genelist |
Method | Module ID | Function Annotation |
---|---|---|
Co-expression network | CFinderM1017 | 20S proteasome subunit beta 4 [EC:3.4.25.1] transcription factor SPN1 regulator of nonsense transcripts 2 IWS1 RNA processing nuclear-transcribed mRNA catabolic process regulation of DNA-templated transcription gravitropism DNA binding threonine-type endopeptidase activity RNA binding |
more details in UCSC | details of chromatin state |
Gene | Type | Chr | Start | End | Strand |
---|---|---|---|---|---|
MD06G1038400 | mRNA | Chr06 | 4918024 | 4922251 | - |
CDS: |
MD06G1038400 |
Protein: |
MD06G1038400 |
Gene family | Subfamily |
---|---|
Transcription Factors Family | IWS1 |
Species | Gene ID | Score of Inparanoid | Annotation |
---|---|---|---|
Arabidopsis thaliana | AT1G32130.1 | 1 | ATIWS1;HNI9;IWS1|ARABIDOPSIS THALIANA IWS1 (FROM YEAST INTERACTS WITH SPT6);HIGH NITROGEN INSENSITIVE 9; |
Arabidopsis thaliana | AT1G32130.2 | 0.938 | ATIWS1;HNI9;IWS1|ARABIDOPSIS THALIANA IWS1 (FROM YEAST INTERACTS WITH SPT6);HIGH NITROGEN INSENSITIVE 9; |
Prunus persica | Prupe.5G026700.2.p | 1 | Transcription elongation factor (TFIIS) family protein |
Prunus persica | Prupe.5G026700.1.p | 1 | Transcription elongation factor (TFIIS) family protein |
Pyrus communis | PCP005517.1 | 1 | - |
Pyrus x bretschneideri | Pbr040867.1 | 1 | - |
Rosa multiflora | Rmu_sc0002283.1_g000053.1 | 1 | - |
Rubus occidentalis | Ro05_G17785 | 1 | - |
Fragaria vesca | mrna13709.1 | 1 | Transcription elongation factor (TFIIS) family protein |
Vitis vinifera | GSVIVT01011111001 | 1 | Transcription elongation factor (TFIIS) family protein |
Solanum lycopersicum | Solyc06g066320.2.1 | 1 | Transcription elongation factor (TFIIS) family protein |
Populus trichocarpa | Potri.001G135900.1 | 1 | Transcription elongation factor (TFIIS) family protein |
Populus trichocarpa | Potri.003G097700.1 | 0.737 | Transcription elongation factor (TFIIS) family protein |
Nicotiana benthamiana | Niben101Scf09628g00021.1 | 1 | Transcription factor IWS1 |
Nicotiana benthamiana | Niben101Scf07030g04003.1 | 0.962 | Transcription factor IWS1 |
Oryza sativa | LOC_Os01g05420.1 | 1 | "IWS1 C-terminus family protein, putative, expressed" |
Zea mays | GRMZM2G085254_P01 | 1 | IWS1 family protein; |
GO term | Description | Category |
---|---|---|
GO:0005634 | nucleus | cellular component |
GO:0003677 | DNA binding | molecular_function |
KO | Description | Enzyme |
---|---|---|
K17498 | transcription factor SPN1 | - |
Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
---|---|---|---|---|
PF08711.7 | Med26 | 293 | 350 | 5.40E-18 |