Detail information of MD06G1038400 Annotation
Gene IDAnnotation
MD06G1038400Transcription elongation factor (TFIIS) family protein

Network
Network CategoryGlobal NetworkConditional network
(different tissues and developmental stages)
Coexpression PositiveTop300 PCC genelistTop300 PCC genelist
Coexpression NegativeTop300 PCC genelistTop300 PCC genelist

Functional module
MethodModule IDFunction Annotation
Co-expression networkCFinderM101720S proteasome subunit beta 4 [EC:3.4.25.1]
transcription factor SPN1
regulator of nonsense transcripts 2
IWS1
RNA processing
nuclear-transcribed mRNA catabolic process
regulation of DNA-templated transcription
gravitropism
DNA binding
threonine-type endopeptidase activity
RNA binding

Gene structure and chromatin state
more details in UCSCdetails of chromatin state

Location
GeneTypeChrStartEndStrand
MD06G1038400mRNAChr0649180244922251-

Sequences
CDS:
Protein:

Gene family
Gene familySubfamily
Transcription Factors FamilyIWS1

Orthologous genes
SpeciesGene IDScore of InparanoidAnnotation
Arabidopsis thalianaAT1G32130.11ATIWS1;HNI9;IWS1|ARABIDOPSIS THALIANA IWS1 (FROM YEAST INTERACTS WITH SPT6);HIGH NITROGEN INSENSITIVE 9;
Arabidopsis thalianaAT1G32130.20.938ATIWS1;HNI9;IWS1|ARABIDOPSIS THALIANA IWS1 (FROM YEAST INTERACTS WITH SPT6);HIGH NITROGEN INSENSITIVE 9;
Prunus persicaPrupe.5G026700.2.p1Transcription elongation factor (TFIIS) family protein
Prunus persicaPrupe.5G026700.1.p1Transcription elongation factor (TFIIS) family protein
Pyrus communisPCP005517.11-
Pyrus x bretschneideriPbr040867.11-
Rosa multifloraRmu_sc0002283.1_g000053.11-
Rubus occidentalisRo05_G177851-
Fragaria vescamrna13709.11Transcription elongation factor (TFIIS) family protein
Vitis viniferaGSVIVT010111110011Transcription elongation factor (TFIIS) family protein
Solanum lycopersicumSolyc06g066320.2.11Transcription elongation factor (TFIIS) family protein
Populus trichocarpaPotri.001G135900.11Transcription elongation factor (TFIIS) family protein
Populus trichocarpaPotri.003G097700.10.737Transcription elongation factor (TFIIS) family protein
Nicotiana benthamianaNiben101Scf09628g00021.11Transcription factor IWS1
Nicotiana benthamianaNiben101Scf07030g04003.10.962Transcription factor IWS1
Oryza sativaLOC_Os01g05420.11"IWS1 C-terminus family protein, putative, expressed"
Zea maysGRMZM2G085254_P011IWS1 family protein;

Gene Ontology
GO termDescriptionCategory
GO:0005634nucleuscellular component
GO:0003677DNA bindingmolecular_function

KEGG
KODescriptionEnzyme
K17498transcription factor SPN1-

Pfam domain
Pfam accessionPfam nameAlignment startAlignment endE-value
PF08711.7Med262933505.40E-18


Expression pattern
TOP