Gene detail

Detail information of MD06G1041900 Annotation

Gene ID	Annotation
MD06G1041900	Plant invertase/pectin methylesterase inhibitor superfamily protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD06G1041900	mRNA	Chr06	5550174	5554864	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT5G38610.1	1	Plant invertase/pectin methylesterase inhibitor superfamily protein
Prunus persica	Prupe.5G048600.1.p	1	Plant invertase/pectin methylesterase inhibitor superfamily protein
Pyrus x bretschneideri	Pbr014555.1	1	-
Rosa multiflora	Rmu_sc0002039.1_g000005.1	1	-
Populus trichocarpa	Potri.003G086600.1	1	Plant invertase/pectin methylesterase inhibitor superfamily protein
Nicotiana benthamiana	Niben101Scf00218g01001.1	1	Plant invertase/pectin methylesterase inhibitor superfamily protein LENGTH=199
Oryza sativa	LOC_Os04g36770.1	1	"PME/invertase inhibitor, putative, expressed"

Gene Ontology

GO term	Description	Category
GO:0030599	pectinesterase activity	molecular_function
GO:0004857	enzyme inhibitor activity	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04043.11	PMEI	34	182	2.50E-27

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	0.510608
SRR5252888	dormant buds	no	dormant buds(0 month)	1.54032
SRR5252889	dormant buds	no	dormant buds(0 month)	2.52786
SRR5252886	dormant buds	no	dormant buds(1 months)	0.978334
SRR5252887	dormant buds	no	dormant buds(1 months)	0.346592
SRR5252884	dormant buds	no	dormant buds(2 months)	0.276754
SRR5252882	dormant buds	no	dormant buds(3 months)	0.555138
SRR5252883	dormant buds	no	dormant buds(3 months)	0.453688
SRR5252880	dormant buds	no	dormant buds(4 months)	0.277016
SRR5252881	dormant buds	no	dormant buds(4 months)	0.461215
SRR5252878	bud break	no	bud break	1.37958
SRR5252879	bud break	no	bud break	1.52981
SRR3744766	flower	no	mature	0
SRR3744767	flower	no	mature	0.105556
SRR3744768	flower	no	mature	0.269729
SRR6308190	stigmas	no	open flowers	1.07399
SRR6308181	styles	no	open flowers	2.02328
SRR6308188	filaments	no	open flowers	0
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	0
SRR6308194	sepals	no	open flowers	2.29435
SRR6308193	receptacles	no	open flowers	2.19484
SRR6308189	ovaries	no	open flowers	8.1617
SRR3384922	fruit	no	1 week after full bloom	7.40811
SRR3384921	fruit	no	2 week after full bloom	8.44087
SRR3384920	fruit	no	3 week after full bloom	0.495489
SRR3384919	fruit	no	4 week after full bloom	0.572198
SRR3384923	fruit	no	5 week after full bloom	0
SRR3384918	fruit	no	6 week after full bloom	0.242303
SRR3384917	fruit	no	8 week after full bloom	0.174912
SRR3384916	fruit	no	10 week after full bloom	0
SRR3384915	fruit	no	12 week after full bloom	0
SRR3384914	fruit	no	14 week after full bloom	0
SRR3384913	fruit	no	16 week after full bloom	0
SRR3384912	fruit	no	18 week after full bloom	0
SRR3384911	fruit	no	19 week after full bloom	0
SRR3384910	fruit	no	20 week after full bloom	0
SRR768128	whole fruit	no	25 days post anthesis	1.39894
SRR768129	whole fruit	no	35 days post anthesis	1.19486
SRR768130	whole fruit	no	60 days post anthesis	0.57237
SRR768131	whole fruit	no	87 days post anthesis	0
SRR7343308	immature fruit flesh	no	immature	0
SRR7343309	immature fruit flesh	no	immature	0
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0
SRR7403506	fruit	uninfected	mature	0
SRR7403507	fruit	uninfected	mature	0
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0
SRR7403503	fruit	infected with penicillium expansum	mature	0
SRR7403505	fruit	infected with penicillium expansum	mature	0
SRR1613973	Central seeds	no	20DAPF	1.68829
SRR1613974	Central seeds	no	20DAPF	2.42524
SRR1613975	Central seeds	no	20DAPF	2.68422
SRR1613976	Lateral seeds	no	20DAPF	1.07291
SRR1613977	Lateral seeds	no	20DAPF	0.633409
SRR1613978	Lateral seeds	no	20DAPF	0.835946
SRR3744786	stem	no	mature	0.184969
SRR3744787	stem	no	mature	0.122213
SRR3744772	stem	no	mature	0.426592
SRX765691	seedling shoot apex	no	4-6 week old seedling	2.46776
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	1.62156
SRR1089478	leaf	Virus-free	plantlets	0
SRR1089477	leaf	ASGV-infected	plantlets	0.191683
SRR767660	leaf	uninfected	fully developed	3.00311
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	10.8322
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	2.67931
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	9.70365
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	4.84681
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	1.49661
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	1.91552
SRR6308182	young leaf	no	immature leaves	1.84168
SRR3744769	leaf	no	mature	0.0626661
SRR3744770	leaf	no	mature	0
SRR3744771	leaf	no	mature	0
SRR5405145	leaf	no	mature	1.32841
SRR6320561	leaf	no	mature	1.28373