Gene detail

Detail information of MD06G1051100 Annotation

Gene ID	Annotation
MD06G1051100	ubiquitin C-terminal hydrolase 3

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0098	proton-transporting V-type ATPase endoplasmic reticulum

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD06G1051100	mRNA	Chr06	7036160	7040029	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
Ubiquitin Family	UCH

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT4G17510.1	1	UCH3\|ubiquitin C-terminal hydrolase 3
Pyrus communis	PCP026235.1	1	-
Rosa multiflora	Rmu_sc0007104.1_g000010.1	1	-
Rubus occidentalis	Ro05_G11787	1	-
Fragaria vesca	mrna10836.1	1	ubiquitin C-terminal hydrolase 3
Vitis vinifera	GSVIVT01004795001	1	ubiquitin C-terminal hydrolase 3
Solanum lycopersicum	Solyc06g060850.2.1	1	ubiquitin C-terminal hydrolase 3
Populus trichocarpa	Potri.003G081000.2	1	ubiquitin C-terminal hydrolase 3
Nicotiana benthamiana	Niben101Scf00428g11001.1	1	Ubiquitin carboxyl-terminal hydrolase isozyme L3
Nicotiana benthamiana	Niben101Scf06078g03003.1	0.698	Ubiquitin carboxyl-terminal hydrolase isozyme L3
Oryza sativa	LOC_Os02g43760.1	1	"ubiquitin carboxyl-terminal hydrolase, family 1, putative,expressed"
Oryza sativa	LOC_Os04g46190.1	1	"ubiquitin carboxyl-terminal hydrolase, family 1, putative,expressed"
Oryza sativa	LOC_Os04g57190.2	1	"ubiquitin carboxyl-terminal hydrolase, family 1, putative,expressed"
Zea mays	GRMZM2G145226_P01	1	-
Zea mays	GRMZM2G094705_P01	0.669	-

Gene Ontology

GO term	Description	Category
GO:0005622	intracellular	cellular component
GO:0004221	obsolete ubiquitin thiolesterase activity	molecular_function
GO:0006511	ubiquitin-dependent protein catabolic process	biological_process

KEGG

KO	Description	Enzyme
K05609	ubiquitin carboxyl-terminal hydrolase L3	EC:3.4.19.12

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01088.17	Peptidase_C12	13	215	7.70E-59

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	48.9847
SRR5252888	dormant buds	no	dormant buds(0 month)	32.1629
SRR5252889	dormant buds	no	dormant buds(0 month)	45.5992
SRR5252886	dormant buds	no	dormant buds(1 months)	24.4543
SRR5252887	dormant buds	no	dormant buds(1 months)	33.0687
SRR5252884	dormant buds	no	dormant buds(2 months)	29.3581
SRR5252882	dormant buds	no	dormant buds(3 months)	28.5985
SRR5252883	dormant buds	no	dormant buds(3 months)	46.0067
SRR5252880	dormant buds	no	dormant buds(4 months)	33.1013
SRR5252881	dormant buds	no	dormant buds(4 months)	36.8348
SRR5252878	bud break	no	bud break	22.5407
SRR5252879	bud break	no	bud break	19.7723
SRR3744766	flower	no	mature	35.4243
SRR3744767	flower	no	mature	36.2172
SRR3744768	flower	no	mature	37.1483
SRR6308190	stigmas	no	open flowers	50.3364
SRR6308181	styles	no	open flowers	53.6291
SRR6308188	filaments	no	open flowers	45.1137
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	61.6587
SRR6308192	pollen	no	open flowers	130.484
SRR6308191	petals	no	open flowers	37.603
SRR6308194	sepals	no	open flowers	27.907
SRR6308193	receptacles	no	open flowers	58.8112
SRR6308189	ovaries	no	open flowers	43.1556
SRR3384922	fruit	no	1 week after full bloom	41.2733
SRR3384921	fruit	no	2 week after full bloom	42.1891
SRR3384920	fruit	no	3 week after full bloom	30.2773
SRR3384919	fruit	no	4 week after full bloom	34.18
SRR3384923	fruit	no	5 week after full bloom	34.0306
SRR3384918	fruit	no	6 week after full bloom	31.9754
SRR3384917	fruit	no	8 week after full bloom	29.3191
SRR3384916	fruit	no	10 week after full bloom	24.0992
SRR3384915	fruit	no	12 week after full bloom	32.0373
SRR3384914	fruit	no	14 week after full bloom	26.542
SRR3384913	fruit	no	16 week after full bloom	24.5229
SRR3384912	fruit	no	18 week after full bloom	21.5202
SRR3384911	fruit	no	19 week after full bloom	28.4753
SRR3384910	fruit	no	20 week after full bloom	24.2083
SRR768128	whole fruit	no	25 days post anthesis	31.3015
SRR768129	whole fruit	no	35 days post anthesis	47.4337
SRR768130	whole fruit	no	60 days post anthesis	33.1071
SRR768131	whole fruit	no	87 days post anthesis	29.1392
SRR7343308	immature fruit flesh	no	immature	30.4466
SRR7343309	immature fruit flesh	no	immature	28.0623
SRR6320494	ripe fruit flesh	no	mature	49.0249
SRR5405143	ripe fruit peel	no	mature	43.272
SRR6320572	ripe fruit peel	no	mature	19.2062
SRR7403504	fruit	uninfected	mature	21.2558
SRR7403506	fruit	uninfected	mature	21.0619
SRR7403507	fruit	uninfected	mature	23.5752
SRR7403500	fruit	infected with penicillium expansum	mature	25.6522
SRR7403501	fruit	infected with penicillium expansum	mature	30.9928
SRR7403508	fruit	infected with penicillium expansum	mature	27.5638
SRR7403502	fruit	infected with penicillium expansum	mature	19.9965
SRR7403503	fruit	infected with penicillium expansum	mature	19.5034
SRR7403505	fruit	infected with penicillium expansum	mature	18.2852
SRR1613973	Central seeds	no	20DAPF	44.0693
SRR1613974	Central seeds	no	20DAPF	40.973
SRR1613975	Central seeds	no	20DAPF	41.1931
SRR1613976	Lateral seeds	no	20DAPF	40.5567
SRR1613977	Lateral seeds	no	20DAPF	41.5235
SRR1613978	Lateral seeds	no	20DAPF	42.2425
SRR3744786	stem	no	mature	44.5511
SRR3744787	stem	no	mature	45.3778
SRR3744772	stem	no	mature	47.4025
SRX765691	seedling shoot apex	no	4-6 week old seedling	33.1405
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	38.1815
SRR1089478	leaf	Virus-free	plantlets	22.9075
SRR1089477	leaf	ASGV-infected	plantlets	21.7701
SRR767660	leaf	uninfected	fully developed	20.7625
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	16.3617
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	15.6109
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	35.768
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	23.1502
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	23.8649
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	16.2788
SRR6308182	young leaf	no	immature leaves	36.0317
SRR3744769	leaf	no	mature	34.7046
SRR3744770	leaf	no	mature	32.7069
SRR3744771	leaf	no	mature	33.5131
SRR5405145	leaf	no	mature	12.9931
SRR6320561	leaf	no	mature	20.0162