Gene detail

Detail information of MD06G1057700 Annotation

Gene ID	Annotation
MD06G1057700	C2H2-like zinc finger protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0278

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD06G1057700	mRNA	Chr06	8900422	8901411	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
Transcription Factors Family	C2H2

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Pyrus communis	PCP018773.1	1	-
Rosa multiflora	Rmu_ssc0000485.1_g000001.1	1	-
Rubus occidentalis	Ro05_G18439	1	-
Fragaria vesca	mrna08922.1	1	C2H2-like zinc finger protein
Solanum lycopersicum	Solyc06g060740.1.1	1	C2H2-like zinc finger protein
Populus trichocarpa	Potri.001G157700.1	1	C2H2-like zinc finger protein

Gene Ontology

GO term	Description	Category
GO:0046872	metal ion binding	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13912.2	zf-C2H2_6	3	27	7.80E-07
PF13912.2	zf-C2H2_6	227	246	0.00072
PF13912.2	zf-C2H2_6	265	289	3.90E-10

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	2.03112
SRR5252888	dormant buds	no	dormant buds(0 month)	1.71183
SRR5252889	dormant buds	no	dormant buds(0 month)	1.21187
SRR5252886	dormant buds	no	dormant buds(1 months)	2.41615
SRR5252887	dormant buds	no	dormant buds(1 months)	1.28395
SRR5252884	dormant buds	no	dormant buds(2 months)	0.205047
SRR5252882	dormant buds	no	dormant buds(3 months)	0.616952
SRR5252883	dormant buds	no	dormant buds(3 months)	0.224091
SRR5252880	dormant buds	no	dormant buds(4 months)	0.615722
SRR5252881	dormant buds	no	dormant buds(4 months)	1.02514
SRR5252878	bud break	no	bud break	1.83983
SRR5252879	bud break	no	bud break	3.85366
SRR3744766	flower	no	mature	1.09458
SRR3744767	flower	no	mature	1.34605
SRR3744768	flower	no	mature	1.17052
SRR6308190	stigmas	no	open flowers	7.08038
SRR6308181	styles	no	open flowers	4.96975
SRR6308188	filaments	no	open flowers	1.66577
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	1.06959
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	0.709675
SRR6308194	sepals	no	open flowers	0.171998
SRR6308193	receptacles	no	open flowers	2.33135
SRR6308189	ovaries	no	open flowers	6.68054
SRR3384922	fruit	no	1 week after full bloom	0.770238
SRR3384921	fruit	no	2 week after full bloom	1.8759
SRR3384920	fruit	no	3 week after full bloom	1.74353
SRR3384919	fruit	no	4 week after full bloom	2.2042
SRR3384923	fruit	no	5 week after full bloom	1.61245
SRR3384918	fruit	no	6 week after full bloom	0.538495
SRR3384917	fruit	no	8 week after full bloom	0.259149
SRR3384916	fruit	no	10 week after full bloom	0
SRR3384915	fruit	no	12 week after full bloom	0.199164
SRR3384914	fruit	no	14 week after full bloom	0
SRR3384913	fruit	no	16 week after full bloom	0
SRR3384912	fruit	no	18 week after full bloom	0
SRR3384911	fruit	no	19 week after full bloom	0
SRR3384910	fruit	no	20 week after full bloom	0.080168
SRR768128	whole fruit	no	25 days post anthesis	4.27232
SRR768129	whole fruit	no	35 days post anthesis	3.42363
SRR768130	whole fruit	no	60 days post anthesis	1.48816
SRR768131	whole fruit	no	87 days post anthesis	1.28017
SRR7343308	immature fruit flesh	no	immature	0.569596
SRR7343309	immature fruit flesh	no	immature	0.568965
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0
SRR7403506	fruit	uninfected	mature	0
SRR7403507	fruit	uninfected	mature	0
SRR7403500	fruit	infected with penicillium expansum	mature	0.55124
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0
SRR7403503	fruit	infected with penicillium expansum	mature	0
SRR7403505	fruit	infected with penicillium expansum	mature	0
SRR1613973	Central seeds	no	20DAPF	4.05527
SRR1613974	Central seeds	no	20DAPF	5.25821
SRR1613975	Central seeds	no	20DAPF	4.95456
SRR1613976	Lateral seeds	no	20DAPF	4.91736
SRR1613977	Lateral seeds	no	20DAPF	4.89315
SRR1613978	Lateral seeds	no	20DAPF	4.97741
SRR3744786	stem	no	mature	0.630779
SRR3744787	stem	no	mature	0.490807
SRR3744772	stem	no	mature	0.267
SRX765691	seedling shoot apex	no	4-6 week old seedling	3.21842
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	2.79165
SRR1089478	leaf	Virus-free	plantlets	0.367864
SRR1089477	leaf	ASGV-infected	plantlets	0.285348
SRR767660	leaf	uninfected	fully developed	0.559204
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	6.38968
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	1.07039
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	25.5354
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	1.40046
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0
SRR6308182	young leaf	no	immature leaves	3.45348
SRR3744769	leaf	no	mature	0.321338
SRR3744770	leaf	no	mature	0.535051
SRR3744771	leaf	no	mature	0.528279
SRR5405145	leaf	no	mature	0.657324
SRR6320561	leaf	no	mature	0.959215