Gene detail

Detail information of MD06G1074600 Annotation

Gene ID	Annotation
MD06G1074600	Calcium-binding EF-hand family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD06G1074600	mRNA	Chr06	18630173	18630616	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT1G12310.1	1	Calcium-binding EF-hand family protein
Arabidopsis thaliana	AT1G62820.1	0.667	Calcium-binding EF-hand family protein
Solanum lycopersicum	Solyc11g072270.1.1	1	Calcium-binding EF-hand family protein
Nicotiana benthamiana	Niben101Scf03069g01001.1	1	Calcium-binding EF-hand family protein LENGTH=148
Nicotiana benthamiana	Niben101Scf03069g01002.1	0.833	Calcium-binding EF-hand family protein LENGTH=148
Oryza sativa	LOC_Os08g02420.1	1	"OsCML7 - Calmodulin-related calcium sensor protein, expressed"
Zea mays	GRMZM2G391364_P01	1	Calmodulin
Zea mays	GRMZM2G324643_P01	0.814	Calmodulin;

Gene Ontology

GO term	Description	Category
GO:0005509	calcium ion binding	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13405.2	EF-hand_6	13	41	1.70E-07
PF13499.2	EF-hand_7	84	143	8.90E-12

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	41.9467
SRR5252888	dormant buds	no	dormant buds(0 month)	5.77985
SRR5252889	dormant buds	no	dormant buds(0 month)	6.69565
SRR5252886	dormant buds	no	dormant buds(1 months)	0.815795
SRR5252887	dormant buds	no	dormant buds(1 months)	5.63569
SRR5252884	dormant buds	no	dormant buds(2 months)	4.84626
SRR5252882	dormant buds	no	dormant buds(3 months)	5.5549
SRR5252883	dormant buds	no	dormant buds(3 months)	4.53976
SRR5252880	dormant buds	no	dormant buds(4 months)	3.4649
SRR5252881	dormant buds	no	dormant buds(4 months)	2.69212
SRR5252878	bud break	no	bud break	7.59251
SRR5252879	bud break	no	bud break	6.1231
SRR3744766	flower	no	mature	23.0792
SRR3744767	flower	no	mature	21.3049
SRR3744768	flower	no	mature	24.925
SRR6308190	stigmas	no	open flowers	9.5874
SRR6308181	styles	no	open flowers	11.1243
SRR6308188	filaments	no	open flowers	9.2126
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	25.8541
SRR6308192	pollen	no	open flowers	124.7
SRR6308191	petals	no	open flowers	9.40338
SRR6308194	sepals	no	open flowers	7.52042
SRR6308193	receptacles	no	open flowers	14.963
SRR6308189	ovaries	no	open flowers	13.1271
SRR3384922	fruit	no	1 week after full bloom	51.4084
SRR3384921	fruit	no	2 week after full bloom	74.6647
SRR3384920	fruit	no	3 week after full bloom	90.2424
SRR3384919	fruit	no	4 week after full bloom	73.3432
SRR3384923	fruit	no	5 week after full bloom	77.1051
SRR3384918	fruit	no	6 week after full bloom	92.5065
SRR3384917	fruit	no	8 week after full bloom	142.751
SRR3384916	fruit	no	10 week after full bloom	136.24
SRR3384915	fruit	no	12 week after full bloom	142.352
SRR3384914	fruit	no	14 week after full bloom	130.881
SRR3384913	fruit	no	16 week after full bloom	141.469
SRR3384912	fruit	no	18 week after full bloom	126.268
SRR3384911	fruit	no	19 week after full bloom	141.175
SRR3384910	fruit	no	20 week after full bloom	122.456
SRR768128	whole fruit	no	25 days post anthesis	57.4491
SRR768129	whole fruit	no	35 days post anthesis	49.2084
SRR768130	whole fruit	no	60 days post anthesis	83.2077
SRR768131	whole fruit	no	87 days post anthesis	62.1003
SRR7343308	immature fruit flesh	no	immature	19.3702
SRR7343309	immature fruit flesh	no	immature	13.6135
SRR6320494	ripe fruit flesh	no	mature	256.498
SRR5405143	ripe fruit peel	no	mature	81.4896
SRR6320572	ripe fruit peel	no	mature	139.358
SRR7403504	fruit	uninfected	mature	181.695
SRR7403506	fruit	uninfected	mature	196.817
SRR7403507	fruit	uninfected	mature	197.117
SRR7403500	fruit	infected with penicillium expansum	mature	131.414
SRR7403501	fruit	infected with penicillium expansum	mature	144.557
SRR7403508	fruit	infected with penicillium expansum	mature	140.094
SRR7403502	fruit	infected with penicillium expansum	mature	102.612
SRR7403503	fruit	infected with penicillium expansum	mature	101.451
SRR7403505	fruit	infected with penicillium expansum	mature	88.9027
SRR1613973	Central seeds	no	20DAPF	43.2084
SRR1613974	Central seeds	no	20DAPF	42.7287
SRR1613975	Central seeds	no	20DAPF	50.4215
SRR1613976	Lateral seeds	no	20DAPF	42.3928
SRR1613977	Lateral seeds	no	20DAPF	53.3439
SRR1613978	Lateral seeds	no	20DAPF	44.9892
SRR3744786	stem	no	mature	59.775
SRR3744787	stem	no	mature	68.1036
SRR3744772	stem	no	mature	74.5963
SRX765691	seedling shoot apex	no	4-6 week old seedling	36.0659
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	30.2809
SRR1089478	leaf	Virus-free	plantlets	82.4914
SRR1089477	leaf	ASGV-infected	plantlets	64.9219
SRR767660	leaf	uninfected	fully developed	23.6905
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	61.151
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	15.1295
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	117.914
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	48.5104
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	29.1475
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	36.4665
SRR6308182	young leaf	no	immature leaves	17.5448
SRR3744769	leaf	no	mature	23.9772
SRR3744770	leaf	no	mature	20.1259
SRR3744771	leaf	no	mature	18.5116
SRR5405145	leaf	no	mature	13.1479
SRR6320561	leaf	no	mature	13.0116