Gene ID | Annotation |
---|---|
MD06G1077900 | Nucleic acid-binding |
Network Category | Global Network | Conditional network (different tissues and developmental stages) |
---|---|---|
Coexpression Positive | Top300 PCC genelist | Top300 PCC genelist |
Coexpression Negative | Top300 PCC genelist | Top300 PCC genelist |
Method | Module ID | Function Annotation |
---|---|---|
Co-expression network | CFinderM0638 | ncRNA metabolic process RNA binding chloroplast relocation phosphatidylglycerol biosynthetic process carotenoid biosynthetic process chloroplast Group II intron splicing thylakoid membrane organization suspensor development isopentenyl diphosphate biosynthetic process damaged DNA binding |
more details in UCSC | details of chromatin state |
Gene | Type | Chr | Start | End | Strand |
---|---|---|---|---|---|
MD06G1077900 | mRNA | Chr06 | 19283206 | 19289381 | - |
CDS: |
MD06G1077900 |
Protein: |
MD06G1077900 |
Gene family | Subfamily |
---|---|
-- | -- |
Species | Gene ID | Score of Inparanoid | Annotation |
---|---|---|---|
Arabidopsis thaliana | AT1G12800.1 | 1 | "Nucleic acid-binding, OB-fold-like protein" |
Prunus persica | Prupe.5G095700.2.p | 1 | "Nucleic acid-binding, OB-fold-like protein" |
Prunus persica | Prupe.5G095700.1.p | 0.87 | "Nucleic acid-binding, OB-fold-like protein" |
Pyrus communis | PCP018449.1 | 1 | - |
Pyrus x bretschneideri | Pbr007538.1 | 1 | - |
Pyrus x bretschneideri | Pbr011037.1 | 1 | - |
Rosa multiflora | Rmu_sc0001250.1_g000003.1 | 1 | - |
Rubus occidentalis | Ro05_G11063 | 1 | - |
Fragaria vesca | mrna32437.1 | 1 | "Nucleic acid-binding, OB-fold-like protein" |
Vitis vinifera | GSVIVT01019806001 | 1 | "Nucleic acid-binding, OB-fold-like protein" |
Solanum lycopersicum | Solyc08g007950.2.1 | 1 | "Nucleic acid-binding, OB-fold-like protein" |
Populus trichocarpa | Potri.003G124200.1 | 1 | "Nucleic acid-binding, OB-fold-like protein" |
Nicotiana benthamiana | Niben101Scf04315g01006.1 | 1 | "Nucleic acid-binding, OB-fold-like protein LENGTH=767" |
Nicotiana benthamiana | Niben101Scf01111g05017.1 | 0.61 | "Nucleic acid-binding, OB-fold-like protein LENGTH=767" |
Oryza sativa | LOC_Os02g02390.1 | 1 | "S1 RNA binding domain containing protein, expressed" |
Zea mays | GRMZM2G088114_P01 | 1 | "Nucleic acid-binding, OB-fold-like protein " |
GO term | Description | Category |
---|---|---|
GO:0003723 | RNA binding | molecular_function |
KO | Description | Enzyme |
---|---|---|
-- | -- | -- |
Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
---|---|---|---|---|
PF00575.19 | S1 | 587 | 659 | 1.10E-11 |