Gene detail

Detail information of MD06G1087600 Annotation

Gene ID	Annotation
MD06G1087600	ARID/BRIGHT DNA-binding domain

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD06G1087600	mRNA	Chr06	21422951	21426016	-

Sequences

CDS:

MD06G1087600

TTTTGAGTCCACCTGGTACTGTCAGGGTGTCACCCACTATCATTTTTTCGACAATTTCCTCAACTCCAACGTTATTCTTGCCTGTCCTTGCTCATCCCCTTGTCCCTTTTGCCGCCTCCGCATTTCTGCAAATTCACAAAGGTGGCTGCTTTCCGAAGCCAAAACCAAAAAGAAAGCAACCCAGAAATGTCCAGGTAAAAAAGACATTTCCAAAACACTCTGCAAATAAAAGAGGGCAAAGGGCCTCACACCCTCTGCCCAAAATTTGTTTCTGTTGTTTTGAATTTGATCTTTTGGGAAAAAGATTCTTGTTGGGTTTTCATTGGTCAAATCGAAGTTCATGGCAGGATGGTCATCCTTAACAGCTGGGTCGGTCTCAGATTGCGTCGAAACTAATGACACATGTCAGAAAAATGGTGTTTTTCCTGAAACCAATCATGTTGGTTCTGTACAGGATGGTGTGGATTTTGATGAGGGTGATCAAAAGGGTAGGCTAAGATGTATGTTTGATCGAGTTTTAGCTGTTTTTCTTAAGGAAATTGGTGATGGAGGTGGTTTTGTTAGGCCTGTCCCAGCAGTGATTGGTGATAGGCAACCTGTTGATTTGTTCAAATTGTTCTGTGTGGTGAAAGATAGAGGTGGGATTGATTCGGTTTCGAAGAACATTTTTTGGTCTTTTGTTGCCAATGAATTGGGTTTTGATCAGGAAGCAATGTGTTCTGTGAAATTGATTTACTTTAAATATTTGAATGAGCTGGAGAAATGGTTTAGGGAGATTTGTGAAACTAGGCGTTCGGGAAATGGGGATTTGCATCCGTTGTCTTCGGAGTTGGTGAGAGAGTTTGGAGGTTTGTTGTCGGGTTGGCCAGAGCGGAAGGGCAAAAGTGATGGAGAGGTTCATCTGGTATCTGGAGAATGCAATGGTGATGATGACGAAAAAGTTTGTAATTACGATCAGAATGATATTTTGATATCACTATCTAGTCTCAGTAAAAAAGAAAATGATCGTAAAAGAAAGCGAGAATACTTAGTAGGAATGCTAAATTGGGTAGCCCAGGTTGCAAAGCAACCAAATGATCATTCAATTGGAGCAATACCAGGGCCAACTAAGTGGAAAGAGCATAGGAGCGATGACGAGTGCTGGGTCCAAGCACTTAGAGCAAAGGAGGCATTGCTGATAAGAAGGAATGTTAATTCAGAGGCTGAAGAATGTCTCCAGCAGAAGAAGCTAAAGATGCATCCATTGTTGTACGAAGATAATATTGTTGCTGGTCGCCAGTGCTCAGGGAGGTTTCGATGCAGTGAAAGGCTTCCTCATTCAGTTAAATCTCAATCATGCCCTTGTTGCCGTAAAAAAGAGGTGGAAAACGATTCTATGGAGAAAGCTCCCGCAGAAGTTGATTTATTGGCCACTGATGCAACGTCTGAGGAGAATCCCCGCGAAAAGGATGTCTCTATAGGCTCTCATGCTCAAGCTGATGTCCCTGAATGGACTGGGGTGGCTTCTGAAAGTGATATTAAATGGCTAGGCACACGGGTATGGCCCTTGAAACGTGAAGAAGACGGCCCCCTTAGTGAAACAGATCTTATTGGCCAAGGAAGACAAGATAAGTGTGGCTGTGGATTTCCAGGTTCTGTTGCATGTTTCCGATTTCACATTACTGAGGCTAGGATGAAATTGAAGAGAGAGCTTGGTTCCTTGTTCTATCATTGGCGATTTGATCGAATGGGTGAGGAAGTTTCTCTTCGGTGGACAGCTGAAGAAGAAAAGAGATTCAAGGATTTGGTAAAGTTAAATCACTCAAATTCTCCTTTTATTGAGGGAAATACCTCAAGTTCTTCTTCCTTTTGGGATAGTGCATCCAAGTGGTTTCTTAGAAAAACAAGGGAAGACTTGGTAAGCTATTACTTCAATGTGTTTGTTGTCCAGCGCAGAAGTTATCAAAATCGTGCAACTCCAAAAACCATTGATAGTGATGATGACGTAACAGAGTTGGGATCTCTAAGTCATGGGTTTAGGCGTGAGATAGTTGAGGTTTCAGCCAATTCTCTACCATGTTCTCTGAACCAGCAGTCCACTGATTTCGACTAGGTATAAATTCTGTCCCTGGGAGTTAGATAATCGGACTGGGGTTTGAACCACTGCATTAACGTATCAAATGGTTTTGCAATTTTGAGGGCTGTGCGTGTCAAGGTGGAAGCGGGCCTGGTGGGATTGGTGGTGAGGCCAGAAGGTAGAATTGATGGAATGCGCCGAAGAATGTTGTTAGTACTCGACAATTGTCTTCAGCTTTCGTTTTGAAGAACCATGCTACAATTTTGGATGGATGCATCGTGATACTGTATCTTATACCAGGTTCTATAACCTTGGATACAACTATAGAAGTAGATAGGGAAACAAGAGAGGAAGAGACACAGAGTTGTCCAAGTTTTCGGGCATTTCTTTCGTTTTTAGAAAACCATTTTTCTTTGTTGTAACTTCTGACAGGC

Protein:

Gene family

Gene family	Subfamily
Transcription Factors Family	ARID
Epigenetic Regulators	ARID

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT4G11400.1	1	ARID/BRIGHT DNA-binding domain;ELM2 domain protein
Pyrus communis	PCP013559.1	1	-
Pyrus x bretschneideri	Pbr018219.1	1	-
Pyrus x bretschneideri	Pbr018197.1	1	-
Rosa multiflora	Rmu_ssc0000465.1_g000021.1	1	-
Rubus occidentalis	Ro05_G11447	1	-
Fragaria vesca	mrna32520.1	1	ARID/BRIGHT DNA-binding domain;ELM2 domain protein
Vitis vinifera	GSVIVT01019386001	1	ARID/BRIGHT DNA-binding domain;ELM2 domain protein
Solanum lycopersicum	Solyc08g081290.2.1	1	ARID/BRIGHT DNA-binding domain;ELM2 domain protein
Populus trichocarpa	Potri.001G101800.1	1	ARID/BRIGHT DNA-binding domain;ELM2 domain protein
Populus trichocarpa	Potri.003G129800.1	0.611	ARID/BRIGHT DNA-binding domain;ELM2 domain protein
Nicotiana benthamiana	Niben101Scf11738g00001.1	1	ARID/BRIGHT DNA-binding domain;ELM2 domain protein LENGTH=573
Nicotiana benthamiana	Niben101Scf04988g01015.1	0.712	ARID/BRIGHT DNA-binding domain;ELM2 domain protein LENGTH=573

Gene Ontology

GO term	Description	Category
GO:0005622	intracellular	cellular component
GO:0003677	DNA binding	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01388.17	ARID	73	140	1.40E-09

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	0.369551
SRR5252888	dormant buds	no	dormant buds(0 month)	0.583526
SRR5252889	dormant buds	no	dormant buds(0 month)	0.525765
SRR5252886	dormant buds	no	dormant buds(1 months)	0.411808
SRR5252887	dormant buds	no	dormant buds(1 months)	0.875341
SRR5252884	dormant buds	no	dormant buds(2 months)	0.209688
SRR5252882	dormant buds	no	dormant buds(3 months)	0.490713
SRR5252883	dormant buds	no	dormant buds(3 months)	0.496522
SRR5252880	dormant buds	no	dormant buds(4 months)	0.839546
SRR5252881	dormant buds	no	dormant buds(4 months)	0.698896
SRR5252878	bud break	no	bud break	0.696844
SRR5252879	bud break	no	bud break	0.424999
SRR3744766	flower	no	mature	0.160087
SRR3744767	flower	no	mature	0.216151
SRR3744768	flower	no	mature	0.292775
SRR6308190	stigmas	no	open flowers	0.112062
SRR6308181	styles	no	open flowers	0
SRR6308188	filaments	no	open flowers	0.144623
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0.149466
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	0
SRR6308194	sepals	no	open flowers	0.1799
SRR6308193	receptacles	no	open flowers	0.430457
SRR6308189	ovaries	no	open flowers	0.0777713
SRR3384922	fruit	no	1 week after full bloom	0.360928
SRR3384921	fruit	no	2 week after full bloom	0.674815
SRR3384920	fruit	no	3 week after full bloom	1.40728
SRR3384919	fruit	no	4 week after full bloom	0.837856
SRR3384923	fruit	no	5 week after full bloom	0.934172
SRR3384918	fruit	no	6 week after full bloom	1.07051
SRR3384917	fruit	no	8 week after full bloom	0.83901
SRR3384916	fruit	no	10 week after full bloom	1.29072
SRR3384915	fruit	no	12 week after full bloom	0.882364
SRR3384914	fruit	no	14 week after full bloom	1.48114
SRR3384913	fruit	no	16 week after full bloom	1.8996
SRR3384912	fruit	no	18 week after full bloom	1.63715
SRR3384911	fruit	no	19 week after full bloom	1.60511
SRR3384910	fruit	no	20 week after full bloom	1.63925
SRR768128	whole fruit	no	25 days post anthesis	0.791152
SRR768129	whole fruit	no	35 days post anthesis	1.12944
SRR768130	whole fruit	no	60 days post anthesis	1.23814
SRR768131	whole fruit	no	87 days post anthesis	2.68622
SRR7343308	immature fruit flesh	no	immature	2.32464
SRR7343309	immature fruit flesh	no	immature	2.51185
SRR6320494	ripe fruit flesh	no	mature	0.930314
SRR5405143	ripe fruit peel	no	mature	0.863181
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0.857275
SRR7403506	fruit	uninfected	mature	0.616569
SRR7403507	fruit	uninfected	mature	0.960844
SRR7403500	fruit	infected with penicillium expansum	mature	0.188568
SRR7403501	fruit	infected with penicillium expansum	mature	0.0699575
SRR7403508	fruit	infected with penicillium expansum	mature	0.201727
SRR7403502	fruit	infected with penicillium expansum	mature	0.116973
SRR7403503	fruit	infected with penicillium expansum	mature	0.13065
SRR7403505	fruit	infected with penicillium expansum	mature	0.352316
SRR1613973	Central seeds	no	20DAPF	1.522
SRR1613974	Central seeds	no	20DAPF	1.70677
SRR1613975	Central seeds	no	20DAPF	1.78599
SRR1613976	Lateral seeds	no	20DAPF	1.30059
SRR1613977	Lateral seeds	no	20DAPF	1.27441
SRR1613978	Lateral seeds	no	20DAPF	1.30067
SRR3744786	stem	no	mature	0.748604
SRR3744787	stem	no	mature	0.577435
SRR3744772	stem	no	mature	0.443025
SRX765691	seedling shoot apex	no	4-6 week old seedling	0.274721
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	0.28656
SRR1089478	leaf	Virus-free	plantlets	0.442744
SRR1089477	leaf	ASGV-infected	plantlets	0.392494
SRR767660	leaf	uninfected	fully developed	0.192548
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0.372614
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0.502057
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0.245472
SRR6308182	young leaf	no	immature leaves	0.0401779
SRR3744769	leaf	no	mature	0.275803
SRR3744770	leaf	no	mature	0.192965
SRR3744771	leaf	no	mature	0.142368
SRR5405145	leaf	no	mature	0.112414
SRR6320561	leaf	no	mature	0