Gene detail

Detail information of MD06G1100400 Annotation

Gene ID	Annotation
MD06G1100400	ubiquitin-conjugating enzyme 10

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0352	E3 ubiquitin-protein ligase RFWD3 [EC:2.3.2.27] regulation of protein phosphorylation cAMP-dependent protein kinase complex ubiquitin-conjugating enzyme E2 D [EC:2.3.2.23] cAMP-dependent protein kinase regulator activity clathrin coat of trans-Golgi network vesicle clathrin coat of coated pit

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD06G1100400	mRNA	Chr06	23670618	23681581	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
Ubiquitin Family	UBC

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT5G53300.2	1	UBC10\|ubiquitin-conjugating enzyme 10
Arabidopsis thaliana	AT5G53300.4	1	UBC10\|ubiquitin-conjugating enzyme 10
Arabidopsis thaliana	AT5G53300.1	1	UBC10\|ubiquitin-conjugating enzyme 10
Prunus persica	Prupe.5G114000.2.p	1	ubiquitin-conjugating enzyme 10
Prunus persica	Prupe.5G114000.1.p	1	ubiquitin-conjugating enzyme 10
Pyrus communis	PCP021641.1	1	-
Pyrus x bretschneideri	Pbr014124.1	1	-
Rubus occidentalis	Ro05_G10987	1	-
Fragaria vesca	mrna32027.1	1	ubiquitin-conjugating enzyme 10
Oryza sativa	LOC_Os02g16040.1	1	"ubiquitin-conjugating enzyme, putative, expressed"
Oryza sativa	LOC_Os01g60410.1	1	"ubiquitin-conjugating enzyme, putative, expressed"
Oryza sativa	LOC_Os01g60360.1	1	"ubiquitin-conjugating enzyme, putative"
Oryza sativa	LOC_Os09g12230.1	1	"ubiquitin-conjugating enzyme, putative, expressed"

Gene Ontology

GO term	Description	Category
GO:0016881	acid-amino acid ligase activity	molecular_function

KEGG

KO	Description	Enzyme
K06689	ubiquitin-conjugating enzyme E2 D	EC:2.3.2.23

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00179.22	UQ_con	5	141	4.70E-54

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	146.668
SRR5252888	dormant buds	no	dormant buds(0 month)	48.0513
SRR5252889	dormant buds	no	dormant buds(0 month)	65.108
SRR5252886	dormant buds	no	dormant buds(1 months)	47.9597
SRR5252887	dormant buds	no	dormant buds(1 months)	57.2467
SRR5252884	dormant buds	no	dormant buds(2 months)	49.4887
SRR5252882	dormant buds	no	dormant buds(3 months)	42.3671
SRR5252883	dormant buds	no	dormant buds(3 months)	69.7547
SRR5252880	dormant buds	no	dormant buds(4 months)	40.5852
SRR5252881	dormant buds	no	dormant buds(4 months)	55.7532
SRR5252878	bud break	no	bud break	42.2685
SRR5252879	bud break	no	bud break	41.3319
SRR3744766	flower	no	mature	159.902
SRR3744767	flower	no	mature	151.942
SRR3744768	flower	no	mature	155.037
SRR6308190	stigmas	no	open flowers	124.639
SRR6308181	styles	no	open flowers	130.953
SRR6308188	filaments	no	open flowers	110.671
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	114.276
SRR6308192	pollen	no	open flowers	197.212
SRR6308191	petals	no	open flowers	107.907
SRR6308194	sepals	no	open flowers	96.8988
SRR6308193	receptacles	no	open flowers	150.899
SRR6308189	ovaries	no	open flowers	123.844
SRR3384922	fruit	no	1 week after full bloom	180.888
SRR3384921	fruit	no	2 week after full bloom	202.225
SRR3384920	fruit	no	3 week after full bloom	189.307
SRR3384919	fruit	no	4 week after full bloom	200.323
SRR3384923	fruit	no	5 week after full bloom	199.173
SRR3384918	fruit	no	6 week after full bloom	203.368
SRR3384917	fruit	no	8 week after full bloom	212.756
SRR3384916	fruit	no	10 week after full bloom	180.145
SRR3384915	fruit	no	12 week after full bloom	199.445
SRR3384914	fruit	no	14 week after full bloom	188.278
SRR3384913	fruit	no	16 week after full bloom	221.76
SRR3384912	fruit	no	18 week after full bloom	180.822
SRR3384911	fruit	no	19 week after full bloom	212.15
SRR3384910	fruit	no	20 week after full bloom	148.93
SRR768128	whole fruit	no	25 days post anthesis	131.777
SRR768129	whole fruit	no	35 days post anthesis	118.252
SRR768130	whole fruit	no	60 days post anthesis	100.091
SRR768131	whole fruit	no	87 days post anthesis	76.7858
SRR7343308	immature fruit flesh	no	immature	120.668
SRR7343309	immature fruit flesh	no	immature	120.894
SRR6320494	ripe fruit flesh	no	mature	161.041
SRR5405143	ripe fruit peel	no	mature	194.623
SRR6320572	ripe fruit peel	no	mature	144.999
SRR7403504	fruit	uninfected	mature	163.746
SRR7403506	fruit	uninfected	mature	166.995
SRR7403507	fruit	uninfected	mature	161.12
SRR7403500	fruit	infected with penicillium expansum	mature	352.555
SRR7403501	fruit	infected with penicillium expansum	mature	345.35
SRR7403508	fruit	infected with penicillium expansum	mature	375.05
SRR7403502	fruit	infected with penicillium expansum	mature	300.437
SRR7403503	fruit	infected with penicillium expansum	mature	290.037
SRR7403505	fruit	infected with penicillium expansum	mature	303.097
SRR1613973	Central seeds	no	20DAPF	90.5629
SRR1613974	Central seeds	no	20DAPF	82.5836
SRR1613975	Central seeds	no	20DAPF	96.8894
SRR1613976	Lateral seeds	no	20DAPF	93.5877
SRR1613977	Lateral seeds	no	20DAPF	105.617
SRR1613978	Lateral seeds	no	20DAPF	94.8593
SRR3744786	stem	no	mature	164.967
SRR3744787	stem	no	mature	173.043
SRR3744772	stem	no	mature	160.365
SRX765691	seedling shoot apex	no	4-6 week old seedling	98.9868
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	94.2516
SRR1089478	leaf	Virus-free	plantlets	106.005
SRR1089477	leaf	ASGV-infected	plantlets	99.5545
SRR767660	leaf	uninfected	fully developed	78.5003
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	48.0596
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	67.3252
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	187.211
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	31.6306
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	101.203
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	54.5257
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	90.0576
SRR6308182	young leaf	no	immature leaves	107.753
SRR3744769	leaf	no	mature	117.413
SRR3744770	leaf	no	mature	109.025
SRR3744771	leaf	no	mature	114.372
SRR5405145	leaf	no	mature	55.4242
SRR6320561	leaf	no	mature	64.5783