Gene detail

Detail information of MD06G1101400 Annotation

Gene ID	Annotation
MD06G1101400	SPA1-related 2

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD06G1101400	mRNA	Chr06	23785412	23792786	-

Sequences

CDS:

MD06G1101400

GGCTCCTCCTTTTCCGCGTTTCGATTCAGAAAATTTAGCAAATTAAACTCCACAATTTGCGAAAAAGAAAGAAAATAAAAAAGCTCGAAAATTATCCGAAATTAGGCAAGGCCAAAGATATTTGCTTTTCCATTTCTGGCAAAAGAAAGTAGCATTACTTTCACACTTTGGTTTCTATCTTTTCACTTTATTCTTCAGCTTTGGATTTCTCCTTGGGGGTTTTGAGCTCGGCGATTTCTTCCCCTTTTTGCCCATCTGCTTCTTCCTGCTTCCGAGAATTGAGTCGTCGGCGTTTCTTGGTTTCGCGTGGGAACTGCTTTTCTGCTTCAATTCAGGTACTTGAACGCGGTCTCTCACCAAACAAATCCCCTTATAGAGGGTTGTGAAGAGTTTTGTTGAATGCAATCAGTATAGACATCATGGAGGATGCAGTGGCTGAGGAAGTGAACCCATTAGATCCAGCAGAGGTTGCACAACTCCAAGGGAAAGAGAATGACTACTCACTAAAATCTGAAACCGGCAACCCATTGGAATGCCAAGAGATGCGTATACCAGTTGACGGTGATTATCCCTTAAGCTCGCAACATGAGATTTTAGAGAAAGTAGATATGGCTAGCTATGTTAACAAATTAGAACACCCATATAGTGGCCTAGGCTTTATGAATGATGTTGGTTTCATGGAGGAAGAGCTAACTCTGAGGAATTACAATAGTTCAAACCTAGCCATGCTTGATACATCAAACAATCAAGGAAGAATGCAATCTAGGCAGAACCCGCAACAACATTTATTTCAGCTAGCAAGTGGATCAGGAAGTGGGAGTTCACAAGTCAAAACTGCAGTCAAGGATAATGGGAAGGCAATTTCCGGTGGCTTGGAGAATGAGGGGGCCACATCTTTCCCTGGTTTTTGGAATAAAAGGGAATTAAGTGACAATCACTATGACGTTGTGGAAGAATTGACAAACATTGAAAATACGGGGGCTTCAGCCAACACTTATGCAGGTATTCGGACAAAAATCCTATCTAGGCCAGGATTTTCTGAGTTTTTTGTTAAAAGTACACTGAAGGGTAAGGGTGTCATATTGAAGGGTCCGAATCATGAGAATGGTCACATTGAATCTAGAAACCTGAATAGTTTGAAGGTGGCCGGTGATTCTTTGGCAGCTTCTAATCCAACAATGAGTATGAATGCAAATGTCGTTACGCCTTCTTCCAATGGTGTGAATGTCGGGCTTAGGGGTGGTGGCTCTAATCATGATGAAAACAGTTTGAGAGAATGGCTGAATATTGGACGTCCTAAAGCGAATAAAGTTGAATGCTTGTATATATTTAGACAAATAGTGGATCTGGTGGATAATTTTCATTCTAAAGGAGTTTCTTTGCCTGGATTGCGACCTTCTTTCTTCAAGTTGTTACCTTCAAATCAGGTTAAGTATGTTTGCTTACCAGTCCGGAACGAGATGCTTGAGAGTACGAGGGATAGAGATACATCCCTTTTAGAAAATAGTTCAATCAAGAAAAAGCAAAAGATAAGTCAGAACACTAGATTGCACTGGCCCCAGTTCTCTAGCACTGCCTACTTCATGCATGATAATGTGAATACCAGCCACATCAACATCGCTCGTTTGCAGAACAGAAGTGATGCATTTGATGAACATAATCCAAGAACAAGGCATGAGATACGTACCATATCCACCAATCCTCATATGGATTATGCAGCTCAGCGGTTTACTCCAATAAGCGAGCTATTGGAAGAGAAGTGGTATATTAGTCCTGAGGAACTCAGTGAAGGAAGTTGCACAATTTTTTCAAATATCTACAGTCTGGGTGTTCTTCTTTTTGAGTTACTTGCTCATTTTGACTCAAATAGTGCCCTTGCTGCCGCAATGTCCAATCTGCGCCACAGAATTCTTCCCCCAAATTTCCTGTCAGAAAATGGTAAGGAGGTTGGATTTATTATGTGGCTTCTTCATCCTGAACCATCTTCACGCCCAACAACAAGGCAAATTCTACAATCTGAAGTAGTTAACAGGTTACAGGAGGTTTCTGTAAAAGAATTGTCATCTTCTGTGGAACAAGAGGGTGCAGAATTGGATTTATTATTGCATTTCCTTACTTCTTTGAAAGAACAGAAGCAGAACCATGCCGCAAATTTGTTGGAAACCATTGGGTTCATAGAAGCAGATGTTGAAGAAGTGGAGAGGAGGCACTCTCTAAGAAAACCCTTGATTGATCGTGGCTTGTACGATGAATCCATCAGTGGAAGTAAATATATGTTCGTGAGCAAAGAAGATTCAAGGTCAGAGGTGCTTTCTCCATTATTTCCTGTTCCTAGTTCAAATGAGTCGAGGTTGATGAAAAACATAGATCAGTTTGAGAGTGCTTACTTCTCGATGAGATCAAGAATTCAGATTCCTGAGACTGATTCTAGAGTATGCAGAGATAAAGATTTATTAAGAACTCGCAATAATTGGTATGTGGGAACAAAGGATGAAGACAAGGAGACATGCACTGATCGACTGGGAGCCATCTTTGATGGTTTGTGTAAATATTCGCGGTATAGTAAGTTTGAGGTACGTGGCATACTAAGAAATGGAGATTTCAGCAGTTCCTCTAAAGTAATTTCTTCTATGAGTTTTGATCGGGATGAAGACTATTTTGCTACTGCTGGGGTTTCAATGAAAATTAAGATTTTTGAGTTTAATGCTTTCTTCAACAATTCTGTTGATATTCATTATCCGGTGATTGAGATGTCAAACAAATCAAGGATCACATGTGTTTGCTGGAACAACTACATAAAAAACTATCTGGCTTCATCTGATTATGATGGTGTAATCAAGTTATGGGATGCCAGCACTGGTCAAGAGTTTGCTCAATACACTGAGCATGTAACGAGGGCTTGGTCTGTAGACTTTTCTCAAGTATATCCAACAAAATTAGCCAGTGGAAGTGATGATGGTTCTGTAAAATTGTGGAGCATCAACGAGAAAAACTGTTTAGATACCATCAAGCACGCTGCAAATGTATGCTGTGTACAGTTCTCTGCTCACTCCTCTCATTTGCTGGCCTTTGGGAGTGCGGACTACCACACCTACTGCTATGATCTTCGTAATACTAAAATTCCATGGTGCGTACTGGATGGGCATAAGAAAGCTGTAAGCTTTGTGAAATTTTTGGACTCGGAGACCCTTGTTTCTGCATCCACTGACAGTACATTAAAGCTATGGGATCTTAACAGAACCAGTACGAGTGATCCGTCCACCGATGCTTGCAGCCTAACCCTTGGTGGGCATACTAATGAGAAGAACTTTGTCGGGTTATCCGTTTCAGATGGTTACATAGCATGTGGTTCAGAAACGAATGAGGTTTATGCTTACTATAGATCTCTGCCTATGCCGATCACTTCACACAAGTTTGGCTCCATTGATCCTATTTCTGGAAAGGAGACTGATGATTATAGTGCACAATGGGTTTCGAGTGTCTGCTGGAGAGGGAAATCAGACATGGTTGTCGCTGCCAATTCAGACGGGTGTATAAAAGTGTTGGAGATTGTTTAAGAAAAAGGTAACCCCTTTGACATCAATCAGGAAGTCACTATCCTTTTGAAACCTTGTTGATGTTTTGTTATTCCCCGAGTTTTCTTCTGGAGGCTGTTTATAAAGTTGAAACTGTGAGTTCATACAGAGAAGCCCTAGGAAGTAAGTTGGAATGGAGTCAGAGACTATGAAATCTTAGCGCATCTCGGGTTCTAGCCACATCCTTGTTTGATGGGGGCCAAACTGACTAAATGATTGATGGTGTACGTTTTAGCTACAAAATATATAGTATCTGAAGGACATCAGCTGGTTGTGAAAACACTTTGAATCTTCAAATCCGAAGATTGACATACCAGCACGAGAGCTGACAAACTTCAAACAGTGCCGTATTGCGATATATAAAGGAGACTTGAGGATCGGTTTGTGATACTCGGCTTCAAAATTGTTAAACTGTGACCGAATGTGAAATCAGGGAAGCAGGTTGCAGATGAATATATACTCTTGGAGCAGGTTTGTCAATCATTTTCACACCAGCTATCACATAATGTGGCGAGCCAATTTGATCGGAATGTATGTGCAGTACAACGCTCTTCTTCATATGGAGCCATATGACGCTGTTTGTTGAGAAAAACGTCCGGAAAGCATTTGCAACACTTGCAACGAAGGCGATCTCAGTTGAGTTGTTTTGAGTGTATAGTGTAGAAATTATGGGTCATCTGTTGTAAATTCTCGGCAACTAGATTTATAGGACAACCCTGTTTTTGGGAGACCACAGAATTTACTTTGTATCTCATATGCGATTGCGCAATTATATCTTTTATCTTTTGGGTGGAGCTTTGTCAATTTAATTTTATCTTGCATCTGTAACATGCTGAATTCTAACTTGAATTAGAAGCCAAAATTTACTTAA

Protein:

Gene family

Gene family	Subfamily
Protein Kinases Family	PPC:4.2.3
Ubiquitin Family	DWD

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Prunus persica	Prupe.5G114800.1.p	1	SPA1-related 2
Prunus persica	Prupe.5G114800.2.p	0.734	SPA1-related 2
Pyrus x bretschneideri	Pbr014133.1	1	-
Rosa multiflora	Rmu_ssc0000078.1_g000001.1	1	-
Rubus occidentalis	Ro05_G17839	1	-
Fragaria vesca	mrna32035.1	1	SPA1-related 2
Vitis vinifera	GSVIVT01019492001	1	SPA1-related 2
Solanum lycopersicum	Solyc08g081990.2.1	1	SPA1-related 2
Solanum lycopersicum	Solyc07g063120.2.1	1	SPA1-related 3
Solanum lycopersicum	Solyc12g005950.1.1	1	Transducin/WD40 repeat-like superfamily protein
Populus trichocarpa	Potri.001G094500.1	1	SPA1-related 2
Nicotiana benthamiana	Niben101Scf03985g02026.1	1	"Ubiquitin ligase protein cop1, putative isoform 6 [Theobroma cacao] gb\|EOY24946.1\| Ubiquitin ligase protein cop1, putative isoform 6 [Theobroma cacao]"
Oryza sativa	LOC_Os05g49590.1	1	"suppressor of phythchrome A, putative, expressed"
Zea mays	GRMZM2G020291_P01	1	-
Zea mays	GRMZM2G145556_P01	0.785	-

Gene Ontology

GO term	Description	Category
GO:0004672	protein kinase activity	molecular_function
GO:0005524	ATP binding	molecular_function
GO:0006468	protein phosphorylation	biological_process
GO:0005515	protein binding	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.21	Pkinase	442	535	4.40E-06

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	3.27319
SRR5252888	dormant buds	no	dormant buds(0 month)	14.6967
SRR5252889	dormant buds	no	dormant buds(0 month)	15.9146
SRR5252886	dormant buds	no	dormant buds(1 months)	17.2298
SRR5252887	dormant buds	no	dormant buds(1 months)	14.6636
SRR5252884	dormant buds	no	dormant buds(2 months)	19.8468
SRR5252882	dormant buds	no	dormant buds(3 months)	21.1871
SRR5252883	dormant buds	no	dormant buds(3 months)	17.9519
SRR5252880	dormant buds	no	dormant buds(4 months)	14.2596
SRR5252881	dormant buds	no	dormant buds(4 months)	13.9274
SRR5252878	bud break	no	bud break	10.0433
SRR5252879	bud break	no	bud break	6.37879
SRR3744766	flower	no	mature	7.50013
SRR3744767	flower	no	mature	6.84996
SRR3744768	flower	no	mature	7.17588
SRR6308190	stigmas	no	open flowers	8.5109
SRR6308181	styles	no	open flowers	8.14296
SRR6308188	filaments	no	open flowers	4.76569
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	8.53077
SRR6308192	pollen	no	open flowers	0.228968
SRR6308191	petals	no	open flowers	7.59653
SRR6308194	sepals	no	open flowers	6.87422
SRR6308193	receptacles	no	open flowers	3.67272
SRR6308189	ovaries	no	open flowers	6.6051
SRR3384922	fruit	no	1 week after full bloom	2.17026
SRR3384921	fruit	no	2 week after full bloom	1.8717
SRR3384920	fruit	no	3 week after full bloom	1.64807
SRR3384919	fruit	no	4 week after full bloom	2.0042
SRR3384923	fruit	no	5 week after full bloom	2.6595
SRR3384918	fruit	no	6 week after full bloom	1.97372
SRR3384917	fruit	no	8 week after full bloom	2.18465
SRR3384916	fruit	no	10 week after full bloom	1.98971
SRR3384915	fruit	no	12 week after full bloom	2.02571
SRR3384914	fruit	no	14 week after full bloom	1.89385
SRR3384913	fruit	no	16 week after full bloom	2.31403
SRR3384912	fruit	no	18 week after full bloom	1.95639
SRR3384911	fruit	no	19 week after full bloom	3.47136
SRR3384910	fruit	no	20 week after full bloom	2.30661
SRR768128	whole fruit	no	25 days post anthesis	3.28001
SRR768129	whole fruit	no	35 days post anthesis	1.89453
SRR768130	whole fruit	no	60 days post anthesis	2.15678
SRR768131	whole fruit	no	87 days post anthesis	4.81126
SRR7343308	immature fruit flesh	no	immature	5.83083
SRR7343309	immature fruit flesh	no	immature	2.49159
SRR6320494	ripe fruit flesh	no	mature	5.91863
SRR5405143	ripe fruit peel	no	mature	4.11059
SRR6320572	ripe fruit peel	no	mature	2.19271
SRR7403504	fruit	uninfected	mature	6.33218
SRR7403506	fruit	uninfected	mature	5.79715
SRR7403507	fruit	uninfected	mature	5.50405
SRR7403500	fruit	infected with penicillium expansum	mature	1.26867
SRR7403501	fruit	infected with penicillium expansum	mature	1.31787
SRR7403508	fruit	infected with penicillium expansum	mature	1.62865
SRR7403502	fruit	infected with penicillium expansum	mature	1.51102
SRR7403503	fruit	infected with penicillium expansum	mature	1.61737
SRR7403505	fruit	infected with penicillium expansum	mature	1.13777
SRR1613973	Central seeds	no	20DAPF	6.02716
SRR1613974	Central seeds	no	20DAPF	6.65654
SRR1613975	Central seeds	no	20DAPF	4.48163
SRR1613976	Lateral seeds	no	20DAPF	5.13982
SRR1613977	Lateral seeds	no	20DAPF	4.87369
SRR1613978	Lateral seeds	no	20DAPF	5.99019
SRR3744786	stem	no	mature	5.01022
SRR3744787	stem	no	mature	4.81062
SRR3744772	stem	no	mature	5.40583
SRX765691	seedling shoot apex	no	4-6 week old seedling	4.43104
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	3.35272
SRR1089478	leaf	Virus-free	plantlets	3.81761
SRR1089477	leaf	ASGV-infected	plantlets	4.99716
SRR767660	leaf	uninfected	fully developed	2.38739
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	2.9673
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	2.16512
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0.893718
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	1.40053
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	3.10485
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	1.5878
SRR6308182	young leaf	no	immature leaves	3.28138
SRR3744769	leaf	no	mature	4.46041
SRR3744770	leaf	no	mature	5.00553
SRR3744771	leaf	no	mature	4.92833
SRR5405145	leaf	no	mature	4.47724
SRR6320561	leaf	no	mature	3.31907