Gene detail

Detail information of MD06G1103000 Annotation

Gene ID	Annotation
MD06G1103000	HMG (high mobility group) box protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD06G1103000	mRNA	Chr06	23985096	23987832	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
Transcription Factors Family	HMG
Epigenetic Regulators	HMGB

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT4G23800.1	1	3xHMG-box2\|3xHigh Mobility Group-box2
Arabidopsis thaliana	AT4G23800.2	0.944	3xHMG-box2\|3xHigh Mobility Group-box2
Prunus persica	Prupe.5G115800.1.p	1	HMG (high mobility group) box protein
Pyrus communis	PCP042542.1	1	-
Pyrus x bretschneideri	Pbr014148.1	1	-
Rosa multiflora	Rmu_sc0007366.1_g000005.1	1	-
Rubus occidentalis	Ro05_G17825	1	-
Fragaria vesca	mrna32050.1	1	HMG (high mobility group) box protein
Vitis vinifera	GSVIVT01019504001	1	HMG (high mobility group) box protein
Solanum lycopersicum	Solyc08g082070.2.1	1	HMG (high mobility group) box protein
Populus trichocarpa	Potri.003G138000.1	1	HMG (high mobility group) box protein
Nicotiana benthamiana	Niben101Scf03985g03019.1	1	High mobility group B protein 7
Oryza sativa	LOC_Os02g15810.1	1	"HMG1/2, putative, expressed"
Zea mays	GRMZM2G060253_P01	1	Putative

Gene Ontology

GO term	Description	Category
--	--	--

KEGG

KO	Description	Enzyme
K09273	upstream-binding transcription factor	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00505.15	HMG_box	178	239	4.90E-19
PF00505.15	HMG_box	293	359	4.40E-18
PF00505.15	HMG_box	421	489	6.20E-16

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	14.5293
SRR5252888	dormant buds	no	dormant buds(0 month)	2.51549
SRR5252889	dormant buds	no	dormant buds(0 month)	3.08547
SRR5252886	dormant buds	no	dormant buds(1 months)	11.4033
SRR5252887	dormant buds	no	dormant buds(1 months)	1.26522
SRR5252884	dormant buds	no	dormant buds(2 months)	0.957105
SRR5252882	dormant buds	no	dormant buds(3 months)	1.81319
SRR5252883	dormant buds	no	dormant buds(3 months)	0.755445
SRR5252880	dormant buds	no	dormant buds(4 months)	1.49024
SRR5252881	dormant buds	no	dormant buds(4 months)	3.07191
SRR5252878	bud break	no	bud break	102.312
SRR5252879	bud break	no	bud break	130.618
SRR3744766	flower	no	mature	1.87254
SRR3744767	flower	no	mature	1.93086
SRR3744768	flower	no	mature	1.72429
SRR6308190	stigmas	no	open flowers	1.10187
SRR6308181	styles	no	open flowers	5.10314
SRR6308188	filaments	no	open flowers	3.06503
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	1.12947
SRR6308192	pollen	no	open flowers	6.42375
SRR6308191	petals	no	open flowers	1.87133
SRR6308194	sepals	no	open flowers	3.17381
SRR6308193	receptacles	no	open flowers	15.6932
SRR6308189	ovaries	no	open flowers	7.93456
SRR3384922	fruit	no	1 week after full bloom	34.3986
SRR3384921	fruit	no	2 week after full bloom	102.084
SRR3384920	fruit	no	3 week after full bloom	25.5051
SRR3384919	fruit	no	4 week after full bloom	14.3752
SRR3384923	fruit	no	5 week after full bloom	3.88799
SRR3384918	fruit	no	6 week after full bloom	5.91046
SRR3384917	fruit	no	8 week after full bloom	2.68762
SRR3384916	fruit	no	10 week after full bloom	2.66222
SRR3384915	fruit	no	12 week after full bloom	0.774568
SRR3384914	fruit	no	14 week after full bloom	1.20195
SRR3384913	fruit	no	16 week after full bloom	0.766837
SRR3384912	fruit	no	18 week after full bloom	0.553567
SRR3384911	fruit	no	19 week after full bloom	0.265468
SRR3384910	fruit	no	20 week after full bloom	0.498849
SRR768128	whole fruit	no	25 days post anthesis	91.9603
SRR768129	whole fruit	no	35 days post anthesis	39.4704
SRR768130	whole fruit	no	60 days post anthesis	8.07832
SRR768131	whole fruit	no	87 days post anthesis	1.99911
SRR7343308	immature fruit flesh	no	immature	7.07812
SRR7343309	immature fruit flesh	no	immature	5.29698
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0.360428
SRR7403506	fruit	uninfected	mature	0.263589
SRR7403507	fruit	uninfected	mature	0.243419
SRR7403500	fruit	infected with penicillium expansum	mature	0.644915
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0.355607
SRR7403503	fruit	infected with penicillium expansum	mature	0.397184
SRR7403505	fruit	infected with penicillium expansum	mature	0.476028
SRR1613973	Central seeds	no	20DAPF	30.3168
SRR1613974	Central seeds	no	20DAPF	39.0352
SRR1613975	Central seeds	no	20DAPF	36.8695
SRR1613976	Lateral seeds	no	20DAPF	34.6142
SRR1613977	Lateral seeds	no	20DAPF	44.5857
SRR1613978	Lateral seeds	no	20DAPF	47.9553
SRR3744786	stem	no	mature	1.26144
SRR3744787	stem	no	mature	1.0664
SRR3744772	stem	no	mature	1.19939
SRX765691	seedling shoot apex	no	4-6 week old seedling	89.2526
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	91.8026
SRR1089478	leaf	Virus-free	plantlets	14.4967
SRR1089477	leaf	ASGV-infected	plantlets	27.5538
SRR767660	leaf	uninfected	fully developed	11.3943
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	48.7949
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	27.7621
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0.25349
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	1.47377
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	1.11752
SRR6308182	young leaf	no	immature leaves	132.531
SRR3744769	leaf	no	mature	0.32822
SRR3744770	leaf	no	mature	0.518
SRR3744771	leaf	no	mature	0.437195
SRR5405145	leaf	no	mature	4.95549
SRR6320561	leaf	no	mature	4.27879