Gene detail

Detail information of MD06G1108400 Annotation

Gene ID	Annotation
MD06G1108400	Pentatricopeptide repeat (PPR) superfamily protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0488	raffinose synthase [EC:2.4.1.82] GH36 GSK3/Shaggy Like Protein Kinase Family amine transmembrane transporter activity raffinose alpha-galactosidase activity raffinose catabolic process photosystem II stabilization photosystem II oxygen evolving complex assembly

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD06G1108400	mRNA	Chr06	24794435	24798948	+

Sequences

CDS:

MD06G1108400

CCCCATTGCCCATACACACACAGAGAGATTAGAGATAGATAGAGACCTCCACCATTACAGACTATACCTCTGTTCTCCACGCTTAATGCTTCGAACCCATCTCACATATGACTCTAATAAACCTCAGCTCCCTCTCCCCATGGCTCTCCCGCCTCTCTCACCACCCTTCTCCGCCCCTTCCCATCTTTCCCACCACCACTTTTTTGTTCAGAAATATTCAATCCACTTCCATCAACTTCTCAAAGCTCCTCAGAGTAAAAGCCTCATTGGGGGAGACCCAAAACGGCAGTGGGTTGGCAGAGGACTCTGTTTCTGAGCTGTTGGACGCTGAGTTGCTTGGAAGAGTATCGGGTACTAAAGATGCCCAGGAAGCACTCCAGCTGATCGCTGAAATGCCTGACAGAAATGGTGGTGTTGTGAGTGTATCTGATTGCTGTGCTATTATATCGGCTGCCCTTAAGCGGAACAACCGCGACTTGGCTCTCTCTGTTTTCTATGAAATGCGTGCGAGTTTTGATCAAGGTGTTAATGAAGATGGCCCTCTTGTTGAGAGGTGGAAATGGTCCAGACCAGATGTGCGTGTTTACACATCATTGATTCTGGGTCTAGCTGCGTCACTTAGGGTTTCTGATGCCATGAGGATGATCAACAATGTTTGCCGAGTTGGAGTATCTCCTGCTGAGGAGGTTCCATTTGGGAAGGTTGTTAGGTGTCCTAGCTGTATGATAGCTGTTGCTGTTGCACAACCACAGCATGGTATTCAGGTAGTGTCGTGTGCAAAGTGCTGCTACCAATACGAACTTATTTCTGGCAACATAGCTAGCATTGAGTCGGAAGAAATCAGCATGGATGTTCCAGCTTGGAAAAGGGGACTAAGATTCCTGAACATAATGAAGCAAAGTATTCCTGCGGCTGTTCACTCCATTGTGGTACAAACCCCATCTGGTATAGCTCGTACAAACAGGTTTGCTACTGAAACAGTTGATCTCCCAGCACAGGAAGGGGAAAGGGTAACAATTGCTCTAGCAGCTCCATCAAGTGTTTACAGAGAGGTCGGTCCCTTAAAATTTAGTCCTAAGGCACCAAATTTTTACCCTGGGGAGCCTATCTGCTTGACAAACCATGAAGATGGCCGGGAGTCAAAACTATTAAGAGCCCCCTTAAAGGATGGAGGATCGTTGCTAACTAACCCCTCCATACTTTTTCCAATTGTTGCTGTTTTGGCCTCTGGAAATGCCGCCTCTGGAGTTATAGACCCCACCTTCCCCCAATTCCTTCCAGTTGCTGCAGTAGCATCTCTTGCTGTTGGAGTTACTCTGAACACATTGGTTGTCCCCCAATTAAATCGTCTTCCTCGGAGAATAGTGGATACAGTTGCCATCAAGCAGCAACTTTTATCGCAATATGACACACTCCAATCTCGTATAAGGGGCCTAAAAGAATCTGCTGAAAAAGAGGTCTGGATGTTGGCTCGGATGTGCCAACTTGAGAACAAAATTGTTGCTGTAGGAGAGCCTTCTTATCGTGCTCGAAGAAGTAAAGTCAAAAGGGTCCGAGAAGGCTTGGAAAATTCTCTCAAGGGACGAATTGAACTTATTGACAGCTATGCAAGGATTTCATCAATGATCGAAATTGAGGTAGAACTGGACTCCGATGTTCTTGCTGCTGAAGCAGCAAGCAATGCGGAAAATATTGCTGAACAGATACAGCAAACCATGGAGCTAGAAAACCTTGAAGAGAGATGGAGAATACAAGTTGAAGCAAATGATGAGGCAGAAAGACTTCTTAGTTCCCAACCGATGCCAACAGAACAGGTTTAGAATTTTTACTCCAAAAAAATGAAGCGAAATGATGAAGCAAACGGTAATATCATACCTCCGGGAAAGGAATCAATATTAAGCATGACTCCGGGAAAAGAAGATGGTCAGTTCAGCATGTAGGTGCTGCTTGTTCATGTCCTCCTGGAGATCGTCTTTGTGACACTGAGTAAATGTCGGTGTTCGATTTACGAAGGAATTTCATGTTAAGGGAGGATTAAGGCTAATGTTCATTACAAATTTCAAATTAATCACCACACTTGTAAGTGTTCAAAGAAAGAGCCCCCATTTGACATACATAAGAGTTTTCGTTTCTTCTTGTGAAGATTATGAATAAAGGTTCAGACATTCTTTCAATGTAATTGACGTATCGAAATATTG

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT1G64430.2	1	Pentatricopeptide repeat (PPR) superfamily protein
Arabidopsis thaliana	AT1G64430.1	1	Pentatricopeptide repeat (PPR) superfamily protein
Prunus persica	Prupe.5G121000.1.p	1	Pentatricopeptide repeat (PPR) superfamily protein
Pyrus communis	PCP032789.1	1	-
Pyrus x bretschneideri	Pbr035063.1	1	-
Rubus occidentalis	Ro05_G22865	1	-
Fragaria vesca	mrna32117.1	1	Pentatricopeptide repeat (PPR) superfamily protein
Vitis vinifera	GSVIVT01019542001	1	Pentatricopeptide repeat (PPR) superfamily protein
Populus trichocarpa	Potri.003G140800.1	1	Pentatricopeptide repeat (PPR) superfamily protein
Nicotiana benthamiana	Niben101Scf06529g06023.1	1	Pentatricopeptide repeat (PPR) superfamily protein LENGTH=559
Oryza sativa	LOC_Os08g24390.2	1	expressed protein
Zea mays	GRMZM2G013650_P01	1	Pentatricopeptide repeat (PPR) superfamily protein

Gene Ontology

GO term	Description	Category
--	--	--

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	17.6059
SRR5252888	dormant buds	no	dormant buds(0 month)	1.1157
SRR5252889	dormant buds	no	dormant buds(0 month)	2.49878
SRR5252886	dormant buds	no	dormant buds(1 months)	1.51176
SRR5252887	dormant buds	no	dormant buds(1 months)	1.85775
SRR5252884	dormant buds	no	dormant buds(2 months)	2.96682
SRR5252882	dormant buds	no	dormant buds(3 months)	3.05598
SRR5252883	dormant buds	no	dormant buds(3 months)	3.15475
SRR5252880	dormant buds	no	dormant buds(4 months)	3.69197
SRR5252881	dormant buds	no	dormant buds(4 months)	3.60797
SRR5252878	bud break	no	bud break	4.31685
SRR5252879	bud break	no	bud break	3.8118
SRR3744766	flower	no	mature	3.0109
SRR3744767	flower	no	mature	3.21637
SRR3744768	flower	no	mature	3.57483
SRR6308190	stigmas	no	open flowers	7.12329
SRR6308181	styles	no	open flowers	5.30256
SRR6308188	filaments	no	open flowers	1.15971
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	1.797
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	1.84252
SRR6308194	sepals	no	open flowers	10.7819
SRR6308193	receptacles	no	open flowers	2.68384
SRR6308189	ovaries	no	open flowers	4.27452
SRR3384922	fruit	no	1 week after full bloom	2.63494
SRR3384921	fruit	no	2 week after full bloom	2.93365
SRR3384920	fruit	no	3 week after full bloom	5.56091
SRR3384919	fruit	no	4 week after full bloom	4.14311
SRR3384923	fruit	no	5 week after full bloom	5.61066
SRR3384918	fruit	no	6 week after full bloom	4.52646
SRR3384917	fruit	no	8 week after full bloom	4.60999
SRR3384916	fruit	no	10 week after full bloom	5.39647
SRR3384915	fruit	no	12 week after full bloom	4.82772
SRR3384914	fruit	no	14 week after full bloom	6.83449
SRR3384913	fruit	no	16 week after full bloom	4.18061
SRR3384912	fruit	no	18 week after full bloom	2.92159
SRR3384911	fruit	no	19 week after full bloom	2.20169
SRR3384910	fruit	no	20 week after full bloom	1.34775
SRR768128	whole fruit	no	25 days post anthesis	8.11998
SRR768129	whole fruit	no	35 days post anthesis	1.99261
SRR768130	whole fruit	no	60 days post anthesis	1.83744
SRR768131	whole fruit	no	87 days post anthesis	1.19446
SRR7343308	immature fruit flesh	no	immature	4.00092
SRR7343309	immature fruit flesh	no	immature	3.54758
SRR6320494	ripe fruit flesh	no	mature	1.06639
SRR5405143	ripe fruit peel	no	mature	0.495472
SRR6320572	ripe fruit peel	no	mature	0.927988
SRR7403504	fruit	uninfected	mature	0.627573
SRR7403506	fruit	uninfected	mature	1.0607
SRR7403507	fruit	uninfected	mature	0.734653
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0
SRR7403503	fruit	infected with penicillium expansum	mature	0.0998939
SRR7403505	fruit	infected with penicillium expansum	mature	0.134689
SRR1613973	Central seeds	no	20DAPF	0.225145
SRR1613974	Central seeds	no	20DAPF	0.363498
SRR1613975	Central seeds	no	20DAPF	0.273003
SRR1613976	Lateral seeds	no	20DAPF	0.149104
SRR1613977	Lateral seeds	no	20DAPF	0.179425
SRR1613978	Lateral seeds	no	20DAPF	0.176583
SRR3744786	stem	no	mature	2.39203
SRR3744787	stem	no	mature	2.85932
SRR3744772	stem	no	mature	2.59724
SRX765691	seedling shoot apex	no	4-6 week old seedling	3.72216
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	5.26758
SRR1089478	leaf	Virus-free	plantlets	4.0606
SRR1089477	leaf	ASGV-infected	plantlets	5.11837
SRR767660	leaf	uninfected	fully developed	8.38737
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	11.0427
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	3.73901
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	7.92022
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	4.68996
SRR6308182	young leaf	no	immature leaves	5.33696
SRR3744769	leaf	no	mature	10.0705
SRR3744770	leaf	no	mature	10.8351
SRR3744771	leaf	no	mature	10.9709
SRR5405145	leaf	no	mature	31.0716
SRR6320561	leaf	no	mature	14.2782