Gene detail

Detail information of MD06G1114000 Annotation

Gene ID	Annotation
MD06G1114000	Dof-type zinc finger DNA-binding family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0407	trans-resveratrol di-O-methyltransferase [EC:2.1.1.240] vacuolar protein 8

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD06G1114000	mRNA	Chr06	25347209	25349408	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
Transcription Factors Family	C2C2-Dof

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT4G24060.1	1	Dof-type zinc finger DNA-binding family protein
Prunus persica	Prupe.5G126800.1.p	1	Dof-type zinc finger DNA-binding family protein
Pyrus communis	PCP030132.1	1	-
Pyrus x bretschneideri	Pbr035111.1	1	-
Rosa multiflora	Rmu_sc0000645.1_g000033.1	1	-
Rubus occidentalis	Ro05_G01714	1	-
Fragaria vesca	mrna25096.1	1	Dof-type zinc finger DNA-binding family protein
Populus trichocarpa	Potri.003G144500.1	1	Dof-type zinc finger DNA-binding family protein
Nicotiana benthamiana	Niben101Scf01214g00004.1	1	Dof-type zinc finger DNA-binding family protein LENGTH=352
Nicotiana benthamiana	Niben101Scf04988g02020.1	0.805	Dof-type zinc finger DNA-binding family protein LENGTH=324
Oryza sativa	LOC_Os08g38220.1	1	"dof zinc finger domain containing protein, putative, expressed"
Zea mays	GRMZM2G010290_P01	1	-

Gene Ontology

GO term	Description	Category
GO:0003677	DNA binding	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	4.46585
SRR5252888	dormant buds	no	dormant buds(0 month)	9.87707
SRR5252889	dormant buds	no	dormant buds(0 month)	8.7498
SRR5252886	dormant buds	no	dormant buds(1 months)	5.04334
SRR5252887	dormant buds	no	dormant buds(1 months)	6.40595
SRR5252884	dormant buds	no	dormant buds(2 months)	4.90637
SRR5252882	dormant buds	no	dormant buds(3 months)	6.2819
SRR5252883	dormant buds	no	dormant buds(3 months)	14.432
SRR5252880	dormant buds	no	dormant buds(4 months)	6.26938
SRR5252881	dormant buds	no	dormant buds(4 months)	5.45103
SRR5252878	bud break	no	bud break	13.946
SRR5252879	bud break	no	bud break	9.92507
SRR3744766	flower	no	mature	9.8217
SRR3744767	flower	no	mature	8.95605
SRR3744768	flower	no	mature	9.72638
SRR6308190	stigmas	no	open flowers	11.4021
SRR6308181	styles	no	open flowers	11.9552
SRR6308188	filaments	no	open flowers	4.51428
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	7.20924
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	3.30761
SRR6308194	sepals	no	open flowers	1.42469
SRR6308193	receptacles	no	open flowers	6.17818
SRR6308189	ovaries	no	open flowers	7.32979
SRR3384922	fruit	no	1 week after full bloom	2.45039
SRR3384921	fruit	no	2 week after full bloom	3.02373
SRR3384920	fruit	no	3 week after full bloom	1.72826
SRR3384919	fruit	no	4 week after full bloom	3.15015
SRR3384923	fruit	no	5 week after full bloom	3.8986
SRR3384918	fruit	no	6 week after full bloom	3.88311
SRR3384917	fruit	no	8 week after full bloom	2.63822
SRR3384916	fruit	no	10 week after full bloom	2.95601
SRR3384915	fruit	no	12 week after full bloom	4.00441
SRR3384914	fruit	no	14 week after full bloom	2.60553
SRR3384913	fruit	no	16 week after full bloom	3.01097
SRR3384912	fruit	no	18 week after full bloom	3.80375
SRR3384911	fruit	no	19 week after full bloom	1.82412
SRR3384910	fruit	no	20 week after full bloom	1.46904
SRR768128	whole fruit	no	25 days post anthesis	5.95946
SRR768129	whole fruit	no	35 days post anthesis	5.24846
SRR768130	whole fruit	no	60 days post anthesis	7.17
SRR768131	whole fruit	no	87 days post anthesis	4.98806
SRR7343308	immature fruit flesh	no	immature	1.73696
SRR7343309	immature fruit flesh	no	immature	2.31083
SRR6320494	ripe fruit flesh	no	mature	0.554273
SRR5405143	ripe fruit peel	no	mature	0.484599
SRR6320572	ripe fruit peel	no	mature	0.481058
SRR7403504	fruit	uninfected	mature	0.544343
SRR7403506	fruit	uninfected	mature	0.776275
SRR7403507	fruit	uninfected	mature	0.512053
SRR7403500	fruit	infected with penicillium expansum	mature	0.140688
SRR7403501	fruit	infected with penicillium expansum	mature	0.313167
SRR7403508	fruit	infected with penicillium expansum	mature	0.150506
SRR7403502	fruit	infected with penicillium expansum	mature	0.232727
SRR7403503	fruit	infected with penicillium expansum	mature	0.45489
SRR7403505	fruit	infected with penicillium expansum	mature	0.350478
SRR1613973	Central seeds	no	20DAPF	5.54589
SRR1613974	Central seeds	no	20DAPF	7.06739
SRR1613975	Central seeds	no	20DAPF	5.43221
SRR1613976	Lateral seeds	no	20DAPF	6.26671
SRR1613977	Lateral seeds	no	20DAPF	5.70576
SRR1613978	Lateral seeds	no	20DAPF	5.68734
SRR3744786	stem	no	mature	16.7441
SRR3744787	stem	no	mature	16.4752
SRR3744772	stem	no	mature	15.3663
SRX765691	seedling shoot apex	no	4-6 week old seedling	5.73621
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	6.4391
SRR1089478	leaf	Virus-free	plantlets	11.216
SRR1089477	leaf	ASGV-infected	plantlets	10.8204
SRR767660	leaf	uninfected	fully developed	3.15517
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	4.52037
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	2.97511
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	1.23509
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	3.85781
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	10.8533
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	6.33904
SRR6308182	young leaf	no	immature leaves	4.53285
SRR3744769	leaf	no	mature	13.1367
SRR3744770	leaf	no	mature	14.1828
SRR3744771	leaf	no	mature	13.3689
SRR5405145	leaf	no	mature	9.56159
SRR6320561	leaf	no	mature	4.81896