Gene detail

Detail information of MD06G1121000 Annotation

Gene ID	Annotation
MD06G1121000	growth-regulating factor 8

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0086	ubiquitin-like-specific protease 1C/D [EC:3.4.22.68] GTPase

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD06G1121000	mRNA	Chr06	26143211	26145619	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
Transcription Factors Family	GRF

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT4G24150.1	1	AtGRF8;GRF8\|growth-regulating factor 8
Prunus persica	Prupe.5G131600.2.p	1	growth-regulating factor 8
Prunus persica	Prupe.5G131600.1.p	0.958	growth-regulating factor 8
Pyrus communis	PCP001281.1	1	-
Pyrus x bretschneideri	Pbr038581.1	1	-
Rosa multiflora	Rmu_sc0002110.1_g000002.1	1	-
Rubus occidentalis	Ro05_G01749	1	-
Fragaria vesca	mrna01886.1	1	growth-regulating factor 7
Solanum lycopersicum	Solyc08g083230.1.1	1	growth-regulating factor 8
Populus trichocarpa	Potri.001G082700.1	1	growth-regulating factor 8
Nicotiana benthamiana	Niben101Scf01830g01022.1	1	Growth-regulating factor 8

Gene Ontology

GO term	Description	Category
GO:0005634	nucleus	cellular component
GO:0005524	ATP binding	molecular_function
GO:0005515	protein binding	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08880.7	QLQ	129	161	3.70E-11
PF08879.6	WRC	191	233	2.60E-19

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	0.445343
SRR5252888	dormant buds	no	dormant buds(0 month)	5.55525
SRR5252889	dormant buds	no	dormant buds(0 month)	7.21551
SRR5252886	dormant buds	no	dormant buds(1 months)	6.70043
SRR5252887	dormant buds	no	dormant buds(1 months)	3.4091
SRR5252884	dormant buds	no	dormant buds(2 months)	7.50109
SRR5252882	dormant buds	no	dormant buds(3 months)	4.85367
SRR5252883	dormant buds	no	dormant buds(3 months)	4.56167
SRR5252880	dormant buds	no	dormant buds(4 months)	5.0862
SRR5252881	dormant buds	no	dormant buds(4 months)	4.36852
SRR5252878	bud break	no	bud break	3.61857
SRR5252879	bud break	no	bud break	3.41071
SRR3744766	flower	no	mature	0.457742
SRR3744767	flower	no	mature	0.244881
SRR3744768	flower	no	mature	0.358353
SRR6308190	stigmas	no	open flowers	0
SRR6308181	styles	no	open flowers	0
SRR6308188	filaments	no	open flowers	0.497134
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	0
SRR6308194	sepals	no	open flowers	0
SRR6308193	receptacles	no	open flowers	0.246212
SRR6308189	ovaries	no	open flowers	0
SRR3384922	fruit	no	1 week after full bloom	0.5112
SRR3384921	fruit	no	2 week after full bloom	0.49186
SRR3384920	fruit	no	3 week after full bloom	0.0541364
SRR3384919	fruit	no	4 week after full bloom	0.300084
SRR3384923	fruit	no	5 week after full bloom	0.0475629
SRR3384918	fruit	no	6 week after full bloom	0.0529474
SRR3384917	fruit	no	8 week after full bloom	0
SRR3384916	fruit	no	10 week after full bloom	0
SRR3384915	fruit	no	12 week after full bloom	0
SRR3384914	fruit	no	14 week after full bloom	0
SRR3384913	fruit	no	16 week after full bloom	0
SRR3384912	fruit	no	18 week after full bloom	0
SRR3384911	fruit	no	19 week after full bloom	0
SRR3384910	fruit	no	20 week after full bloom	0
SRR768128	whole fruit	no	25 days post anthesis	0.410054
SRR768129	whole fruit	no	35 days post anthesis	0.82555
SRR768130	whole fruit	no	60 days post anthesis	0.377485
SRR768131	whole fruit	no	87 days post anthesis	0.0947121
SRR7343308	immature fruit flesh	no	immature	0
SRR7343309	immature fruit flesh	no	immature	0
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0
SRR7403506	fruit	uninfected	mature	0
SRR7403507	fruit	uninfected	mature	0
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0
SRR7403503	fruit	infected with penicillium expansum	mature	0
SRR7403505	fruit	infected with penicillium expansum	mature	0
SRR1613973	Central seeds	no	20DAPF	1.50775
SRR1613974	Central seeds	no	20DAPF	1.4665
SRR1613975	Central seeds	no	20DAPF	1.9278
SRR1613976	Lateral seeds	no	20DAPF	1.22166
SRR1613977	Lateral seeds	no	20DAPF	1.50438
SRR1613978	Lateral seeds	no	20DAPF	1.55015
SRR3744786	stem	no	mature	0.497126
SRR3744787	stem	no	mature	0.49187
SRR3744772	stem	no	mature	0.800419
SRX765691	seedling shoot apex	no	4-6 week old seedling	4.1716
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	2.14651
SRR1089478	leaf	Virus-free	plantlets	0.763825
SRR1089477	leaf	ASGV-infected	plantlets	1.35427
SRR767660	leaf	uninfected	fully developed	0
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0.799798
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	15.2365
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0.167306
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0.141116
SRR6308182	young leaf	no	immature leaves	2.48123
SRR3744769	leaf	no	mature	0.21386
SRR3744770	leaf	no	mature	0.309708
SRR3744771	leaf	no	mature	0.138673
SRR5405145	leaf	no	mature	0.582997
SRR6320561	leaf	no	mature	0.14292