Gene detail

Detail information of MD06G1123700 Annotation

Gene ID	Annotation
MD06G1123700	plastid ribosomal protein l11

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0987	chloroplast envelope chloroplast stroma chloroplast thylakoid membrane ribosome protein targeting to chloroplast isopentenyl diphosphate biosynthetic process structural constituent of ribosome peroxiredoxin Q/BCP [EC:1.11.1.15] chloroplast stromal thylakoid peroxiredoxin activity RPS31; 30S ribosomal protein S31 large subunit ribosomal protein L11 chlorophyll biosynthetic process plastid translation rRNA processing

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD06G1123700	mRNA	Chr06	26533260	26535285	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT1G32990.1	1	PRPL11\|plastid ribosomal protein l11
Prunus persica	Prupe.5G134200.1.p	1	plastid ribosomal protein l11
Pyrus communis	PCP015228.1	1	-
Pyrus x bretschneideri	Pbr038605.1	1	-
Rosa multiflora	Rmu_sc0032029.1_g000002.1	1	-
Rosa multiflora	Rmu_sc0004483.1_g000028.1	0.968	-
Rubus occidentalis	Ro05_G01772	1	-
Vitis vinifera	GSVIVT01019689001	1	plastid ribosomal protein l11
Populus trichocarpa	Potri.001G450800.1	1	plastid ribosomal protein l11
Populus trichocarpa	Potri.011G150700.1	0.771	plastid ribosomal protein l11
Nicotiana benthamiana	Niben101Scf07036g03001.1	1	50S ribosomal protein L11
Oryza sativa	LOC_Os03g03020.1	1	"L11 domain containing ribosomal protein, putative, expressed"
Zea mays	GRMZM2G176820_P01	1	50S ribosomal protein L11;

Gene Ontology

GO term	Description	Category
GO:0003735	structural constituent of ribosome	molecular_function
GO:0005840	ribosome	cellular component
GO:0006412	translation	biological_process

KEGG

KO	Description	Enzyme
K02867	large subunit ribosomal protein L11	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03946.10	Ribosomal_L11_N	84	141	2.50E-29
PF00298.15	Ribosomal_L11	146	214	9.80E-24

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	87.5781
SRR5252888	dormant buds	no	dormant buds(0 month)	2.18391
SRR5252889	dormant buds	no	dormant buds(0 month)	2.2137
SRR5252886	dormant buds	no	dormant buds(1 months)	2.54303
SRR5252887	dormant buds	no	dormant buds(1 months)	0.859964
SRR5252884	dormant buds	no	dormant buds(2 months)	2.15814
SRR5252882	dormant buds	no	dormant buds(3 months)	4.91932
SRR5252883	dormant buds	no	dormant buds(3 months)	4.18114
SRR5252880	dormant buds	no	dormant buds(4 months)	4.12399
SRR5252881	dormant buds	no	dormant buds(4 months)	6.21227
SRR5252878	bud break	no	bud break	3.71642
SRR5252879	bud break	no	bud break	9.43516
SRR3744766	flower	no	mature	10.2467
SRR3744767	flower	no	mature	10.76
SRR3744768	flower	no	mature	10.8693
SRR6308190	stigmas	no	open flowers	4.16295
SRR6308181	styles	no	open flowers	3.17524
SRR6308188	filaments	no	open flowers	1.59578
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	3.69017
SRR6308192	pollen	no	open flowers	3.51691
SRR6308191	petals	no	open flowers	3.06022
SRR6308194	sepals	no	open flowers	12.8554
SRR6308193	receptacles	no	open flowers	3.94237
SRR6308189	ovaries	no	open flowers	4.58824
SRR3384922	fruit	no	1 week after full bloom	23.2147
SRR3384921	fruit	no	2 week after full bloom	20.1427
SRR3384920	fruit	no	3 week after full bloom	59.0028
SRR3384919	fruit	no	4 week after full bloom	38.2056
SRR3384923	fruit	no	5 week after full bloom	31.7048
SRR3384918	fruit	no	6 week after full bloom	28.9393
SRR3384917	fruit	no	8 week after full bloom	26.4075
SRR3384916	fruit	no	10 week after full bloom	21.9846
SRR3384915	fruit	no	12 week after full bloom	26.393
SRR3384914	fruit	no	14 week after full bloom	18.8516
SRR3384913	fruit	no	16 week after full bloom	10.2312
SRR3384912	fruit	no	18 week after full bloom	12.3594
SRR3384911	fruit	no	19 week after full bloom	10.4825
SRR3384910	fruit	no	20 week after full bloom	9.0513
SRR768128	whole fruit	no	25 days post anthesis	20.9987
SRR768129	whole fruit	no	35 days post anthesis	15.8991
SRR768130	whole fruit	no	60 days post anthesis	13.0229
SRR768131	whole fruit	no	87 days post anthesis	2.14429
SRR7343308	immature fruit flesh	no	immature	10.8985
SRR7343309	immature fruit flesh	no	immature	10.8854
SRR6320494	ripe fruit flesh	no	mature	8.79129
SRR5405143	ripe fruit peel	no	mature	8.24953
SRR6320572	ripe fruit peel	no	mature	9.7768
SRR7403504	fruit	uninfected	mature	15.9215
SRR7403506	fruit	uninfected	mature	15.8485
SRR7403507	fruit	uninfected	mature	14.337
SRR7403500	fruit	infected with penicillium expansum	mature	0.527564
SRR7403501	fruit	infected with penicillium expansum	mature	0.978617
SRR7403508	fruit	infected with penicillium expansum	mature	0.705477
SRR7403502	fruit	infected with penicillium expansum	mature	1.30905
SRR7403503	fruit	infected with penicillium expansum	mature	1.34026
SRR7403505	fruit	infected with penicillium expansum	mature	1.64282
SRR1613973	Central seeds	no	20DAPF	2.65206
SRR1613974	Central seeds	no	20DAPF	2.38554
SRR1613975	Central seeds	no	20DAPF	2.7032
SRR1613976	Lateral seeds	no	20DAPF	2.49469
SRR1613977	Lateral seeds	no	20DAPF	2.56795
SRR1613978	Lateral seeds	no	20DAPF	2.192
SRR3744786	stem	no	mature	8.6506
SRR3744787	stem	no	mature	8.05454
SRR3744772	stem	no	mature	9.09571
SRX765691	seedling shoot apex	no	4-6 week old seedling	10.0067
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	12.4028
SRR1089478	leaf	Virus-free	plantlets	61.6322
SRR1089477	leaf	ASGV-infected	plantlets	57.3689
SRR767660	leaf	uninfected	fully developed	41.2269
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	54.0016
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	52.048
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	27.6735
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	17.7903
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	9.02043
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	26.0296
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	18.6646
SRR6308182	young leaf	no	immature leaves	15.1132
SRR3744769	leaf	no	mature	25.879
SRR3744770	leaf	no	mature	23.6413
SRR3744771	leaf	no	mature	23.3821
SRR5405145	leaf	no	mature	72.6596
SRR6320561	leaf	no	mature	44.5605