Gene detail

Detail information of MD06G1129500 Annotation

Gene ID	Annotation
MD06G1129500	floral meristem identity control protein LEAFY (LFY)

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0057	trafficking protein particle complex subunit 6 LFY LFY

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD06G1129500	mRNA	Chr06	27318257	27320940	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
Transcription Factors Family	LFY
Epigenetic Regulators	LFY

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT5G61850.1	1	LFY;LFY3\|LEAFY;LEAFY 3
Pyrus x bretschneideri	Pbr029830.1	1	-
Rosa multiflora	Rmu_sc0001576.1_g000018.1	1	-
Rubus occidentalis	Ro05_G01825	1	-
Fragaria vesca	mrna33406.1	1	floral meristem identity control protein LEAFY (LFY)
Vitis vinifera	GSVIVT01008655001	1	floral meristem identity control protein LEAFY (LFY)
Solanum lycopersicum	Solyc03g118160.1.1	1	floral meristem identity control protein LEAFY (LFY)
Populus trichocarpa	Potri.015G106900.1	1	floral meristem identity control protein LEAFY (LFY)
Nicotiana benthamiana	Niben101Scf09414g00008.1	1	Protein LEAFY
Nicotiana benthamiana	Niben101Scf03548g01010.1	0.879	Protein LEAFY
Oryza sativa	LOC_Os04g51000.1	1	"transcription factor FL, putative, expressed"
Zea mays	GRMZM2G180190_P01	1	Floricaula/leafy-like 2
Zea mays	GRMZM2G098813_P01	0.757	Zea floricaula/leafy1

Gene Ontology

GO term	Description	Category
GO:0003677	DNA binding	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	0
SRR5252888	dormant buds	no	dormant buds(0 month)	1.0914
SRR5252889	dormant buds	no	dormant buds(0 month)	0.702401
SRR5252886	dormant buds	no	dormant buds(1 months)	0.616178
SRR5252887	dormant buds	no	dormant buds(1 months)	0.163719
SRR5252884	dormant buds	no	dormant buds(2 months)	0.915108
SRR5252882	dormant buds	no	dormant buds(3 months)	0.131115
SRR5252883	dormant buds	no	dormant buds(3 months)	0.0714359
SRR5252880	dormant buds	no	dormant buds(4 months)	0.130854
SRR5252881	dormant buds	no	dormant buds(4 months)	0.363105
SRR5252878	bud break	no	bud break	0
SRR5252879	bud break	no	bud break	0.216789
SRR3744766	flower	no	mature	0.0275282
SRR3744767	flower	no	mature	0.0241079
SRR3744768	flower	no	mature	0.0242773
SRR6308190	stigmas	no	open flowers	0
SRR6308181	styles	no	open flowers	0
SRR6308188	filaments	no	open flowers	0
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	0
SRR6308194	sepals	no	open flowers	0.11102
SRR6308193	receptacles	no	open flowers	0
SRR6308189	ovaries	no	open flowers	0
SRR3384922	fruit	no	1 week after full bloom	0.0613759
SRR3384921	fruit	no	2 week after full bloom	0
SRR3384920	fruit	no	3 week after full bloom	0
SRR3384919	fruit	no	4 week after full bloom	0
SRR3384923	fruit	no	5 week after full bloom	0
SRR3384918	fruit	no	6 week after full bloom	0
SRR3384917	fruit	no	8 week after full bloom	0
SRR3384916	fruit	no	10 week after full bloom	0
SRR3384915	fruit	no	12 week after full bloom	0
SRR3384914	fruit	no	14 week after full bloom	0
SRR3384913	fruit	no	16 week after full bloom	0
SRR3384912	fruit	no	18 week after full bloom	0
SRR3384911	fruit	no	19 week after full bloom	0
SRR3384910	fruit	no	20 week after full bloom	0
SRR768128	whole fruit	no	25 days post anthesis	0
SRR768129	whole fruit	no	35 days post anthesis	0
SRR768130	whole fruit	no	60 days post anthesis	0
SRR768131	whole fruit	no	87 days post anthesis	0
SRR7343308	immature fruit flesh	no	immature	0
SRR7343309	immature fruit flesh	no	immature	0
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0
SRR7403506	fruit	uninfected	mature	0
SRR7403507	fruit	uninfected	mature	0
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0
SRR7403503	fruit	infected with penicillium expansum	mature	0
SRR7403505	fruit	infected with penicillium expansum	mature	0
SRR1613973	Central seeds	no	20DAPF	0
SRR1613974	Central seeds	no	20DAPF	0
SRR1613975	Central seeds	no	20DAPF	0
SRR1613976	Lateral seeds	no	20DAPF	0
SRR1613977	Lateral seeds	no	20DAPF	0
SRR1613978	Lateral seeds	no	20DAPF	0
SRR3744786	stem	no	mature	0.22659
SRR3744787	stem	no	mature	0.0280271
SRR3744772	stem	no	mature	0.195674
SRX765691	seedling shoot apex	no	4-6 week old seedling	0.108856
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	0.165468
SRR1089478	leaf	Virus-free	plantlets	0
SRR1089477	leaf	ASGV-infected	plantlets	0
SRR767660	leaf	uninfected	fully developed	0.3585
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0.690325
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	1.70879
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0.152376
SRR6308182	young leaf	no	immature leaves	0.371736
SRR3744769	leaf	no	mature	0.0867879
SRR3744770	leaf	no	mature	0.03049
SRR3744771	leaf	no	mature	0
SRR5405145	leaf	no	mature	0
SRR6320561	leaf	no	mature	0