Gene detail

Detail information of MD06G1133100 Annotation

Gene ID	Annotation
MD06G1133100	Polynucleotide adenylyltransferase family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD06G1133100	mRNA	Chr06	27692689	27696188	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT5G23690.1	1	Polynucleotide adenylyltransferase family protein
Prunus persica	Prupe.5G144300.1.p	1	Polynucleotide adenylyltransferase family protein
Pyrus communis	PCP044587.1	1	-
Pyrus x bretschneideri	Pbr010574.1	1	-
Rosa multiflora	Rmu_sc0000302.1_g000052.1	1	-
Rubus occidentalis	Ro05_G01868	1	-
Fragaria vesca	mrna06447.1	1	Polynucleotide adenylyltransferase family protein
Vitis vinifera	GSVIVT01004931001	1	Polynucleotide adenylyltransferase family protein
Solanum lycopersicum	Solyc03g097830.2.1	1	Polynucleotide adenylyltransferase family protein
Populus trichocarpa	Potri.012G105000.1	1	Polynucleotide adenylyltransferase family protein
Nicotiana benthamiana	Niben101Scf01182g02014.1	1	CCA-adding enzyme
Oryza sativa	LOC_Os04g32490.2	1	"tRNA nucleotidyltransferase/polyA polymerase family protein, putative, expressed"
Zea mays	GRMZM2G079658_P01	1	-

Gene Ontology

GO term	Description	Category
GO:0016779	nucleotidyltransferase activity	molecular_function
GO:0003723	RNA binding	molecular_function
GO:0006396	RNA processing	biological_process

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01743.16	PolyA_pol	98	225	1.90E-21
PF12627.3	PolyA_pol_RNAbd	253	314	6.10E-14

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	8.64614
SRR5252888	dormant buds	no	dormant buds(0 month)	4.58246
SRR5252889	dormant buds	no	dormant buds(0 month)	6.4882
SRR5252886	dormant buds	no	dormant buds(1 months)	4.95871
SRR5252887	dormant buds	no	dormant buds(1 months)	4.81187
SRR5252884	dormant buds	no	dormant buds(2 months)	7.50159
SRR5252882	dormant buds	no	dormant buds(3 months)	11.6525
SRR5252883	dormant buds	no	dormant buds(3 months)	9.19813
SRR5252880	dormant buds	no	dormant buds(4 months)	10.5305
SRR5252881	dormant buds	no	dormant buds(4 months)	13.3654
SRR5252878	bud break	no	bud break	7.11406
SRR5252879	bud break	no	bud break	7.93929
SRR3744766	flower	no	mature	2.67736
SRR3744767	flower	no	mature	2.5752
SRR3744768	flower	no	mature	2.78477
SRR6308190	stigmas	no	open flowers	2.04639
SRR6308181	styles	no	open flowers	2.01236
SRR6308188	filaments	no	open flowers	3.96316
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	1.55883
SRR6308192	pollen	no	open flowers	2.2144
SRR6308191	petals	no	open flowers	2.98572
SRR6308194	sepals	no	open flowers	5.00494
SRR6308193	receptacles	no	open flowers	4.55298
SRR6308189	ovaries	no	open flowers	4.41059
SRR3384922	fruit	no	1 week after full bloom	5.19658
SRR3384921	fruit	no	2 week after full bloom	4.27684
SRR3384920	fruit	no	3 week after full bloom	2.94717
SRR3384919	fruit	no	4 week after full bloom	4.27321
SRR3384923	fruit	no	5 week after full bloom	4.819
SRR3384918	fruit	no	6 week after full bloom	3.16268
SRR3384917	fruit	no	8 week after full bloom	3.00553
SRR3384916	fruit	no	10 week after full bloom	3.30375
SRR3384915	fruit	no	12 week after full bloom	3.02056
SRR3384914	fruit	no	14 week after full bloom	3.66189
SRR3384913	fruit	no	16 week after full bloom	2.2834
SRR3384912	fruit	no	18 week after full bloom	3.61904
SRR3384911	fruit	no	19 week after full bloom	3.6081
SRR3384910	fruit	no	20 week after full bloom	3.36145
SRR768128	whole fruit	no	25 days post anthesis	5.84586
SRR768129	whole fruit	no	35 days post anthesis	3.80632
SRR768130	whole fruit	no	60 days post anthesis	2.66696
SRR768131	whole fruit	no	87 days post anthesis	2.36592
SRR7343308	immature fruit flesh	no	immature	5.5801
SRR7343309	immature fruit flesh	no	immature	6.32613
SRR6320494	ripe fruit flesh	no	mature	1.94491
SRR5405143	ripe fruit peel	no	mature	3.67725
SRR6320572	ripe fruit peel	no	mature	1.90169
SRR7403504	fruit	uninfected	mature	4.03229
SRR7403506	fruit	uninfected	mature	3.90667
SRR7403507	fruit	uninfected	mature	3.50132
SRR7403500	fruit	infected with penicillium expansum	mature	0.431666
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0.263881
SRR7403502	fruit	infected with penicillium expansum	mature	0.408036
SRR7403503	fruit	infected with penicillium expansum	mature	0.512712
SRR7403505	fruit	infected with penicillium expansum	mature	0.358452
SRR1613973	Central seeds	no	20DAPF	8.76574
SRR1613974	Central seeds	no	20DAPF	9.06426
SRR1613975	Central seeds	no	20DAPF	6.84739
SRR1613976	Lateral seeds	no	20DAPF	6.49742
SRR1613977	Lateral seeds	no	20DAPF	6.89653
SRR1613978	Lateral seeds	no	20DAPF	7.29219
SRR3744786	stem	no	mature	4.50561
SRR3744787	stem	no	mature	4.1647
SRR3744772	stem	no	mature	4.60026
SRX765691	seedling shoot apex	no	4-6 week old seedling	6.96607
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	7.72178
SRR1089478	leaf	Virus-free	plantlets	2.31468
SRR1089477	leaf	ASGV-infected	plantlets	3.33445
SRR767660	leaf	uninfected	fully developed	6.0386
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	5.8933
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	1.08337
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	18.9275
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	1.85691
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	4.70117
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	2.67324
SRR6308182	young leaf	no	immature leaves	9.48199
SRR3744769	leaf	no	mature	5.25171
SRR3744770	leaf	no	mature	4.695
SRR3744771	leaf	no	mature	5.01671
SRR5405145	leaf	no	mature	5.14684
SRR6320561	leaf	no	mature	5.85644