Gene detail

Detail information of MD06G1137700 Annotation

Gene ID	Annotation
MD06G1137700	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0105	CTR1/EDR1 Kinase tartrate-resistant acid phosphatase type 5 [EC:3.1.3.2] gibberellin 3-beta-dioxygenase [EC:1.14.11.15] large subunit ribosomal protein L7Ae

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD06G1137700	mRNA	Chr06	28281523	28284392	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Prunus persica	Prupe.5G147500.1.p	1	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein
Pyrus x bretschneideri	Pbr037460.1	1	-
Pyrus x bretschneideri	Pbr017699.1	1	-
Vitis vinifera	GSVIVT01008585001	1	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein

Gene Ontology

GO term	Description	Category
GO:0042254	ribosome biogenesis	biological_process
GO:0030529	intracellular ribonucleoprotein complex	cellular component

KEGG

KO	Description	Enzyme
K02936	large subunit ribosomal protein L7Ae	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01248.22	Ribosomal_L7Ae	116	204	1.10E-25

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	104.185
SRR5252888	dormant buds	no	dormant buds(0 month)	126.125
SRR5252889	dormant buds	no	dormant buds(0 month)	141.597
SRR5252886	dormant buds	no	dormant buds(1 months)	119.136
SRR5252887	dormant buds	no	dormant buds(1 months)	106.276
SRR5252884	dormant buds	no	dormant buds(2 months)	132.799
SRR5252882	dormant buds	no	dormant buds(3 months)	131.283
SRR5252883	dormant buds	no	dormant buds(3 months)	137.253
SRR5252880	dormant buds	no	dormant buds(4 months)	162.745
SRR5252881	dormant buds	no	dormant buds(4 months)	156.168
SRR5252878	bud break	no	bud break	147.09
SRR5252879	bud break	no	bud break	205.329
SRR3744766	flower	no	mature	60.411
SRR3744767	flower	no	mature	62.698
SRR3744768	flower	no	mature	60.5201
SRR6308190	stigmas	no	open flowers	53.1159
SRR6308181	styles	no	open flowers	81.6684
SRR6308188	filaments	no	open flowers	145.11
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	56.6853
SRR6308192	pollen	no	open flowers	122.706
SRR6308191	petals	no	open flowers	116.226
SRR6308194	sepals	no	open flowers	77.6956
SRR6308193	receptacles	no	open flowers	148.907
SRR6308189	ovaries	no	open flowers	116.789
SRR3384922	fruit	no	1 week after full bloom	201.188
SRR3384921	fruit	no	2 week after full bloom	213.505
SRR3384920	fruit	no	3 week after full bloom	169.557
SRR3384919	fruit	no	4 week after full bloom	188.748
SRR3384923	fruit	no	5 week after full bloom	141.368
SRR3384918	fruit	no	6 week after full bloom	145.303
SRR3384917	fruit	no	8 week after full bloom	150.301
SRR3384916	fruit	no	10 week after full bloom	134.765
SRR3384915	fruit	no	12 week after full bloom	150.064
SRR3384914	fruit	no	14 week after full bloom	121.732
SRR3384913	fruit	no	16 week after full bloom	122.633
SRR3384912	fruit	no	18 week after full bloom	107.577
SRR3384911	fruit	no	19 week after full bloom	110.855
SRR3384910	fruit	no	20 week after full bloom	92.1859
SRR768128	whole fruit	no	25 days post anthesis	156.17
SRR768129	whole fruit	no	35 days post anthesis	157.362
SRR768130	whole fruit	no	60 days post anthesis	112.413
SRR768131	whole fruit	no	87 days post anthesis	87.2155
SRR7343308	immature fruit flesh	no	immature	122.723
SRR7343309	immature fruit flesh	no	immature	166.44
SRR6320494	ripe fruit flesh	no	mature	77.5023
SRR5405143	ripe fruit peel	no	mature	103.379
SRR6320572	ripe fruit peel	no	mature	70.4862
SRR7403504	fruit	uninfected	mature	101.291
SRR7403506	fruit	uninfected	mature	105.517
SRR7403507	fruit	uninfected	mature	99.5128
SRR7403500	fruit	infected with penicillium expansum	mature	133.401
SRR7403501	fruit	infected with penicillium expansum	mature	136.882
SRR7403508	fruit	infected with penicillium expansum	mature	129.478
SRR7403502	fruit	infected with penicillium expansum	mature	135.738
SRR7403503	fruit	infected with penicillium expansum	mature	127.473
SRR7403505	fruit	infected with penicillium expansum	mature	134.861
SRR1613973	Central seeds	no	20DAPF	181.146
SRR1613974	Central seeds	no	20DAPF	175.233
SRR1613975	Central seeds	no	20DAPF	180.505
SRR1613976	Lateral seeds	no	20DAPF	146.213
SRR1613977	Lateral seeds	no	20DAPF	166.574
SRR1613978	Lateral seeds	no	20DAPF	162.548
SRR3744786	stem	no	mature	89.6339
SRR3744787	stem	no	mature	91.5224
SRR3744772	stem	no	mature	89.2704
SRX765691	seedling shoot apex	no	4-6 week old seedling	167.101
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	168.686
SRR1089478	leaf	Virus-free	plantlets	104.226
SRR1089477	leaf	ASGV-infected	plantlets	105.732
SRR767660	leaf	uninfected	fully developed	83.7
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	88.3054
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	83.1136
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	100.857
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	128.172
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	62.8713
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	94.3695
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	72.4478
SRR6308182	young leaf	no	immature leaves	218.93
SRR3744769	leaf	no	mature	58.8528
SRR3744770	leaf	no	mature	59.6957
SRR3744771	leaf	no	mature	62.9349
SRR5405145	leaf	no	mature	48.3178
SRR6320561	leaf	no	mature	76.782