Gene detail

Detail information of MD06G1157600 Annotation

Gene ID	Annotation
MD06G1157600	AP2/B3-like transcriptional factor family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0840	UV excision repair protein RAD23 IRE/NPH/PI dependent/S6 Kinase SWI/SNF-BAF60b

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD06G1157600	mRNA	Chr06	29949309	29955957	-

Sequences

CDS:

MD06G1157600

TTTTTTTCAGAGGATTTTCAACCCAAAAACTCACCTCTAGGAGCTTCTCACTCACTGGTAGGAAGCCTTCCTTCGCAATTTAGCTTACTTTGTTCTTTGGTAAAGTATTCAACAGAGCGAAAGAAGTGATGGGTAGTAAGCTCGAAGCTTGTGCAGAATGTACTCTGAAGTGTTTGCAGGATCATGGGAACAAGAAAAAAGCTTCACCTGTTGTCGCCTCTTTTTTCAAAATCATGATCGGAGATCAGCTTTCTAAAGTTTTGTTCTTGCCTCCTAAGTTTGCTCCTACTGTGTCAGCATTGGTCAATAAAAAAGCTGTTCTTGAAGATTCACGAGGGTGGCAGTGGAAAGTTACGATATCCAGAGTTGATGGCTCCCTTGCTTTTCAACAAGGATGGAATGCATTTGCATTAGACAATGACCTACAAGTCGGAGAACTTCTTTTCTTCAATTATGTTACGGATTCACATTTTGATGTTAAGATTTGTGACAAATCAGGGTGTGAGAAACTCAAGTTTCCTGAGGCCATGAATCAGAAGAACTGGACGTGGGATAACCAAAATTCCTCTGTCAAAGATGGTCCTTGCCACACAGTTGATAACAGTTTGATGGACAAACAGGGTTCAAGCACCTCTCTTACGTCTGATGCAGATGAAGATATAGGTCAAGATCTGGATCCGATGAATGCCAAGAGGAAAGCACCTATGGTCATGGGAAATGCTTCAAAGTGTGATAATAGTCATGAAAGGTCAAAGCTTAAGCTGAAAGAACCAGATAGAGATATAGGTCAACACCTGCATGATATGAATTCCAAGAGGAAAGCACCTATGGTCATGGGAAATGCTTCGAACTGTGATAATAGTCGTGAAAGGTCAAAGCTTAAGCGGAAAAAACCAGATGGAGATATAGGTCAAGATCTGCATGGTATGAATGCCACGAGGAAAGCACCCGTGGTCACCGGAAATGCTTCAAACTGTGATAATAGTCATGAAAGGTCAAAGCTTAAGCTGAAAGAACCAGATGGAGATATAGGTCAACACCTGTATGTTATGAATGCCAAGAGGAAAGCACCTGTGGTCACCGGAAATGCTTCAAACTGTGATAATAGTCATGAAAGGTCAAAGTTTAAGCTGAAAGAACCAGATGGAGATATAGGTCAAGATCTGTATGGTATGAATGCCAAGACGAAAGCACCTGTGGTCACCGAAAATGCTTCAAACTGTGATAATAGTCATGAAAGGTCAAAGCTTAAGCTGAAAGAACCAGATGGAGATATAGTTCAACACCTGTATGTTATGAATGCCAAGAGGAAAGCACCTGTGGTCACCGGAAATGCTTCAAACTGTGATAATAGTCATGAAAGGTCAAAGTTTAAGCTGAAAGAACCAGATGAAGATATAGGTCAAGATCTGTATGGTATGAATGCCAAGACGAAAGCACCTGTGGTCACCGAAAATGCTTCAAACTGTGATAATAGTCATGAAAGGTCAAAGCTTAAGCTGAAAGAACCAGATGGAGTTATAGATCAACACCTGTATAATATGAATGACAAGGGGGAATGTACAATTGCAACAGAAAATGCTTCAAACTATGATGATAGTAATGAAATGCCAAAGCTCAAGCCAAAAGAAGAATACATTGAAGATATGATCTGTATGATCGATAGAGAACTGGGAGACAAACAAGAAGACAACAGAAGCTGTATATATGATTCACTGAATTTTGAACTATTGGAACTGAAGTCTGGCACTGGTGGAAGCAACGAAGTAGTTGTTTGGGATGGAACATGCTCATATCATGATGATTCATCTGTAAGATTGAGAAACGAGGCTGGCTCGGTTGATAAAAATCCTGTGGCTAAAGAAGCAGTGGCTGCAGCATTTCCAATGGATGAAACCTACTCACCTCATGATGATTCATCACTAAGATTGAGAAACGAGGCTGGCTCAGTTGATAAAAGTCCAGTGGCTAAAGAGGCAGTGACTGCAGCAATTCCGATGGATGAAACATGCTCAAGTCATGATGATTCATCACTAAGATTGAGAGGTGAGGCTAGTTTAGTTGATAAAGCTCCAGTGGCTAGAGAAGCAGTGACTATAGCAATTCCTTCGGATGCATATAAGTTTGATGGGACTGAGAAAAATAATTCTTCTGAAGCCAGAGTGAAAAAGGTATCACCTTCTGGTGATGATTCAAGAACCACCAACAAGACCTCTCATCATCTCTTCCCAACAGCTGCTGTGAATCCTAATGATACAGGCAATAAGGTGGCAGCATCCAAAAAGGAGCATGATTTGATCGATGAAAGTTTTCAAAGAGCTAAAAAGAACTTTACTGGAACTCCTCCAGAGTCTTTTGATATGATGACGAAGGCTGTTAAAAAAGAGTCTGTAGATTTGATTTCAGATCCATGCTTTCAGAAAATCATACCAGAAATAGATGGGAAATCATTCGAGCCAGTCGACGCAGTGTGTAGTCAGATTTCTAATATGATTAAAAGAGAAAAGGACATTGCGTTTCCTGTGCCTGTGATAAAATCTGAACCTGTCGATCAAGTTGAAACCTTTCCAAGCTCATCGTTCTCCTGTTTGGTGGCAGTAGGCAGTCAATCGTTTCTAGAGCTGCCAGTGCGCTTGCCAATACGCATGACCATCAGGGGAAGGCATACACCAGATAGGAGGGTAATTTTCCTTCGAGACACAACAATGAGATTGTGGCCAGTCCTCTACATTGATAATTGTTTCTCCAAAATTTTGTCGAGTGGTTGGGAAGCTTTCAGCAAGGCAAACAACATTCAACCGGGAGATACGTGTGCTATTGGGATCGAAGATGCGTCTGAACGCATATGCAGCGTCCATATAATTAGAACCTAAGATGATACAACACTTTTTGTGATTTTTTGTATGTACCGTGGGAGTATTGTTATTTATATCATCTTGAACAAACCACCTTACGTAACTCTAATAGAGGTGGGGTCCACACATGCGGGTTTAACCTCTACTAGAGAAGTAATACGCAAGATGGTCAGTTCTGATGGTCGAAATAGCTCTACTCTTTCTGTAGAGCTGCAAAACCAGCACGCAGGAACCACGTATTAGGTTGTAGTCTAACAAAGTTTGACCTAGTTTTAGTTCTATCAGGAGCAAGAAGCCCGGGATTCTGAGTGTTGGGTTTTGTCTGTTAAAATATTTTAATTCTGGAACATAATCTTTGTCCATGATGTGTAATTGTCGTAGGTAGAAAGGATGTTGGTCTCATAAATTGCATAAATTACAGCAAAAAGGATGTT

Protein:

Gene family

Gene family	Subfamily
Transcription Factors Family	B3

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Pyrus communis	PCP019842.1	1	-
Pyrus x bretschneideri	Pbr023992.1	1	-
Rosa multiflora	Rmu_sc0004860.1_g000002.1	1	-
Rubus occidentalis	Ro06_G15451	1	-
Vitis vinifera	GSVIVT01007552001	1	AP2/B3-like transcriptional factor family protein
Solanum lycopersicum	Solyc03g111500.2.1	1	AP2/B3-like transcriptional factor family protein
Nicotiana benthamiana	Niben101Scf01826g03012.1	1	"DNA binding protein, putative [Ricinus communis] gb\|EEF40052.1\| DNA binding protein, putative [Ricinus communis]"
Nicotiana benthamiana	Niben101Scf02853g00011.1	0.755	"DNA binding protein, putative [Ricinus communis] gb\|EEF40052.1\| DNA binding protein, putative [Ricinus communis]"
Oryza sativa	LOC_Os01g67830.1	1	"B3 DNA binding domain containing protein, expressed"

Gene Ontology

GO term	Description	Category
GO:0003677	DNA binding	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	0.737106
SRR5252888	dormant buds	no	dormant buds(0 month)	24.8338
SRR5252889	dormant buds	no	dormant buds(0 month)	23.7654
SRR5252886	dormant buds	no	dormant buds(1 months)	22.6768
SRR5252887	dormant buds	no	dormant buds(1 months)	21.0884
SRR5252884	dormant buds	no	dormant buds(2 months)	27.315
SRR5252882	dormant buds	no	dormant buds(3 months)	23.8673
SRR5252883	dormant buds	no	dormant buds(3 months)	24.7636
SRR5252880	dormant buds	no	dormant buds(4 months)	14.5507
SRR5252881	dormant buds	no	dormant buds(4 months)	13.3344
SRR5252878	bud break	no	bud break	12.2236
SRR5252879	bud break	no	bud break	8.92205
SRR3744766	flower	no	mature	0.504575
SRR3744767	flower	no	mature	0.365538
SRR3744768	flower	no	mature	0.562051
SRR6308190	stigmas	no	open flowers	0.249546
SRR6308181	styles	no	open flowers	0.250777
SRR6308188	filaments	no	open flowers	0.321936
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0.166495
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	0.183781
SRR6308194	sepals	no	open flowers	0.311642
SRR6308193	receptacles	no	open flowers	2.30817
SRR6308189	ovaries	no	open flowers	0.490894
SRR3384922	fruit	no	1 week after full bloom	1.67563
SRR3384921	fruit	no	2 week after full bloom	1.60347
SRR3384920	fruit	no	3 week after full bloom	2.01367
SRR3384919	fruit	no	4 week after full bloom	1.66789
SRR3384923	fruit	no	5 week after full bloom	1.66749
SRR3384918	fruit	no	6 week after full bloom	1.60725
SRR3384917	fruit	no	8 week after full bloom	1.3073
SRR3384916	fruit	no	10 week after full bloom	1.06143
SRR3384915	fruit	no	12 week after full bloom	1.05493
SRR3384914	fruit	no	14 week after full bloom	0.609008
SRR3384913	fruit	no	16 week after full bloom	0.60254
SRR3384912	fruit	no	18 week after full bloom	0.592379
SRR3384911	fruit	no	19 week after full bloom	0.51651
SRR3384910	fruit	no	20 week after full bloom	0.384192
SRR768128	whole fruit	no	25 days post anthesis	2.49033
SRR768129	whole fruit	no	35 days post anthesis	1.67302
SRR768130	whole fruit	no	60 days post anthesis	2.15768
SRR768131	whole fruit	no	87 days post anthesis	1.98952
SRR7343308	immature fruit flesh	no	immature	3.29673
SRR7343309	immature fruit flesh	no	immature	3.00169
SRR6320494	ripe fruit flesh	no	mature	0.27582
SRR5405143	ripe fruit peel	no	mature	0.717833
SRR6320572	ripe fruit peel	no	mature	0.120389
SRR7403504	fruit	uninfected	mature	0.27013
SRR7403506	fruit	uninfected	mature	0.24255
SRR7403507	fruit	uninfected	mature	0.220225
SRR7403500	fruit	infected with penicillium expansum	mature	0.0698165
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0.0373444
SRR7403502	fruit	infected with penicillium expansum	mature	0.0577453
SRR7403503	fruit	infected with penicillium expansum	mature	0
SRR7403505	fruit	infected with penicillium expansum	mature	0
SRR1613973	Central seeds	no	20DAPF	2.05916
SRR1613974	Central seeds	no	20DAPF	2.50945
SRR1613975	Central seeds	no	20DAPF	1.99532
SRR1613976	Lateral seeds	no	20DAPF	2.00244
SRR1613977	Lateral seeds	no	20DAPF	2.27388
SRR1613978	Lateral seeds	no	20DAPF	2.19393
SRR3744786	stem	no	mature	1.52409
SRR3744787	stem	no	mature	1.34311
SRR3744772	stem	no	mature	1.47032
SRX765691	seedling shoot apex	no	4-6 week old seedling	3.27422
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	2.99037
SRR1089478	leaf	Virus-free	plantlets	0.609294
SRR1089477	leaf	ASGV-infected	plantlets	0.690756
SRR767660	leaf	uninfected	fully developed	0.42812
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0.449436
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0.0620705
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0.433648
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0
SRR6308182	young leaf	no	immature leaves	2.14799
SRR3744769	leaf	no	mature	0.531528
SRR3744770	leaf	no	mature	0.687516
SRR3744771	leaf	no	mature	0.442898
SRR5405145	leaf	no	mature	0.332962
SRR6320561	leaf	no	mature	0.123248