Gene detail

Detail information of MD06G1165600 Annotation

Gene ID	Annotation
MD06G1165600	P-loop containing nucleoside triphosphate hydrolases superfamily protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0163	pyrimidine ribonucleotide biosynthetic process

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD06G1165600	mRNA	Chr06	30566204	30571522	-

Sequences

CDS:

MD06G1165600

AAACCCTAAACCCCAAAAAAATGAGCGCTCCCAGTCCCATGGAGGTCTCTATGCAAAACCCCCAAGACGCCGGCATCGCCGACCAAAACGGCAGCGTCACAATAGACTCAGCTCCTTCTCCCATTCTTCTCCAAGACAAAGTCCCGGTTTCAGTTGAAGTCAGCCTCAAGCCCTCCAGCACAGCTCGGGCCAACGACGTGCAGTCTGCCGTTGAGAGAATGCTTGAAAAGAGGAGTTTGAGCTATTCTGATGGACCCGTGCCGGTGCCACTTGATGATCGGTTTCTAACAGAAAATGTGCAAAGTATCTGTATTTGCGATACGGATGAGTGGGTGCAGAACCGTGAGATCCTTTTGTTCTGGCAAGTGAAGCCTGTTGTGCATGTTTTCCAGCTTAGCGAAGAGGGAGCATGTGAGGATGTAAGTGGGGATGGACAACCTTCCACCTTCAACGAATGGATCCTTCCTGCAAAGGAATTCGATGGCATGTGGGAAAGCCTAATTTATGAATCTGGTCTCAAGCAAAGGTTGCTGCGTTATGCGGCTAGTGCATTGCTTTTTACTGAAAAGGGTGTCAATCCTTTCCTTGTGTCATGGAATCGCATTGTTCTTTTACACGGACCTCCAGGGACTGGTAAAACTTCTTTGTGCAAAGCACTGGCTCAAAAACTTTCTATTCGATTTAACTCCAGGTACCCGCAATGCCAGCTGATTGAAGTTAATGCACATTCTTTATTCAGTAAATGGTTCTCTGAGAGTGGCAAGTTGGTTGCGAAGCTTTTCTCAAAAATTCAGGAGATGGTTGAGGAGGAAAACAATCTGGTATTTGTTTTGATTGATGAAGTTGAAAGCCTTGCTGCTGCTAGAAAAGCTGCTTTATCTGGCTCCGAACCTTCAGATTCTATTCGGGTAGTGAATGCGCTGCTAACTCAGCTGGATAAATTGAAATCAGCACCAAATGTTATAATTCTGACAACATCGAACATAACTGCTGCTATTGATATTGCGTTTGTTGATCGAGCTGATATCAAAGCATATGTTGGTCCCCCAACTTTGCAAGCGCGTTATGAAATCCTAAGATCCTGCTTGCATGAACTTATACGAACAGGAATCTTATCACATCTAGAGGATTGTGAAAGCATGCTTCCTAACTTTGCTAGCTTGAAAGAGAAACTGAATATGCCTGAGGTACAAGATGCCCAGACACCACTACACCTGTGTAAACAATTGTTCGAAACTGCAGAAGCATGCGAGGGATTGAGCGGGCGATCATTAAGAAAGCTTCCGTTCCTAGCACATGCGGCTCTCGCAAATCCTTACGGTTGTGACCCTAGCAAGTTCTTGAGTACAATGACGGATACGGCTAGGAGGGAGCGTTCTGAGCTACCTGACTGAATGAATAGTTTTCACATCTTGTGAACAATGTATTTGTACCAAAAAACGATGGCGCAAAATATAATTCATTTTAAAGCATTAGTAGCTTCCCTTTGTGATGAAGATGTCATACAAGTATCTGTACCAAAGAACAAATCATTCAAAAACAGGCATGGTTCGATTTCTTGGTGCAAAACATGTAGTTAATTCATGGGTAGAGGTTACAAAATTCATGGGGTTGAGCCATGATATTACTACAAGAAACTATCAACGTACAAGTAGTAGTCCGCTTCTGCTTATCTTCGTTAGTAGTCTGCTTACGCTTGCCTTCATCTTCTGTAGTAGTCTGCTTCTTTGCCTGCCGTAGAACCAAAAAGTTTGCAAATTTCACCATGCTTTCGGATATGATGAGGGCATTTATGAAGCAGATCTTTCGCCTCGGAGTATCTACCTTCCTTAAAGAATGCTTTCAAAACATGGACATACGCGGCAGATGACGGATGTTCCTTAACAGTCAATGCTTTGAAAAAGTCTGCAGCATCCTCCACAGAACCAAACTTCGATATATACTGGACAAACGGTTCTGAGTAAGGTGGGTAGTTCTGTTTCTTCATCAATTGAAGAAGTTTGAATGCTTCTTCGAGTTTTCTGACCTCCAACAATTTTTCGATAAGATTTTTGTATGTGGCTTGCCATGGTACCAAACGAGCTTTTTTCACCATTTCGTCAAGCAGTTTATATGCACCATCTATCTTCCTCTGCTTAAGGAACCCCTCTATCAAGACGTCCATCAGATCAGCATCCGCATCACAACCTTTTTCCATCATCTTTGCAAAACAAATCAGCGCTGTGTCAACTTCATCAGCGGCGCAATGCCCTTGAATCAAAATGGTCCAAGTCTTGATATCAGGAACGCATCCATCTGCTTCCATTTCGTCCAACACATTGCAGGCTTCTTCAAGTCTCTTGGCCTTACAAAGTCCAAAGACCAATTGGCTGTATGTAATGTTGTCCGGCTCGTACCCTGCATTTCTCATAGCCTTCATAACTTCCTCCGCTTGATCAAATCTGCCTGCGCCTGTCAAAGACCTGTGAATCCCATCGTAAACAGCCTTGGATAGTGTATTCCCTGCAGACTCGAACTTCTTTGCAACTCTAAACACCATATCCAGATCCGGTTTATCACTCCCTGAGATGCTCCTTAAAAGCATGCTGCAATCCTGAGCAGAGGGTTTATAAGGGCCGTCCATCATGAGCTCATACAGCTTCACCGCGTCCTCGATCATCCTGCTCTTCTGAAACTGCCGCGTAATCTTTATATAGGTGTCCAAATCCAGCTCATGACCCGCGCCCTTCATCCCCTCAATCACACTCCAAAACTCCCCTATCGAATCAGCCCGCGCAAGAACCCTCGCAACTGCATTGTATGTAATTGTATTGTGTTCATAACCAGAACACTGACCAGCCCAACGGAAAAACCTCAACGCTTTCAACGGGTAATTCCTCAGATCCCTCAAAACCCTAATGACAAAATTATCAGATAACACAATTTTGAGCTCCCCCAATTCTTTTTCAACCCCATCACTCCAATCCGACCCCGAAACAACATCCACCACGCTCTTCACAACATCATCCGCCGCGTTATCTTCGATCATCCTCTCGTAAAAATGCTTGAAAGCCACGACATCACTATCCATCCTCCCCGTTTTCAACTGTTCTCTAATTGCCACATAAGTTTGCTCATCAATGAAAAACCCTTGCTCTTTCATCTTCCTCAAAGCAATCCAAAACTCCATCATCGAACTCTTATGCACTAAAACCCTAAGGATTAAGCTAAACACCGAAGAACTCGGCCTAAATCCGTTCTTCTCGCAGACCCAATTGAAAAAATCCCAAGCCCTTCGTGGATCTTTATCCAATTTCTTCAAAACATAGATTACTACATCGTGGGTGAGTGATGGGTACGACTCGGATAACTCGGTCTCCAACTCGGAAGACCACTTGTTGGCCAGAACGAGTTGCAGGACCGAGTTGGGGGTCGAGGAAAAGAAGAGCTTTTGATGGGTGTTGAGGAAATGGGAATGACAGTGGGATTGATTTGAAAGGAAGTGAGAGAGGTGAGAGGAATGAGTCTCCTGAGAATA

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT4G24710.1	1	P-loop containing nucleoside triphosphate hydrolases superfamily protein
Fragaria vesca	mrna09950.1	1	P-loop containing nucleoside triphosphate hydrolases superfamily protein
Vitis vinifera	GSVIVT01007643001	1	P-loop containing nucleoside triphosphate hydrolases superfamily protein
Populus trichocarpa	Potri.012G086400.1	1	P-loop containing nucleoside triphosphate hydrolases superfamily protein
Nicotiana benthamiana	Niben101Scf04653g09001.1	1	Proteasome-associated ATPase
Nicotiana benthamiana	Niben101Scf02625g04001.1	0.851	ATP-dependent zinc metalloprotease FtsH 1
Oryza sativa	LOC_Os04g40290.1	1	"AAA-type ATPase family protein, putative, expressed"
Zea mays	GRMZM2G019621_P01	1	P-loop containing nucleoside triphosphate hydrolases superfamily protein

Gene Ontology

GO term	Description	Category
GO:0005524	ATP binding	molecular_function
GO:0017111	nucleoside-triphosphatase activity	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	1.35023
SRR5252888	dormant buds	no	dormant buds(0 month)	3.88675
SRR5252889	dormant buds	no	dormant buds(0 month)	1.81138
SRR5252886	dormant buds	no	dormant buds(1 months)	2.44029
SRR5252887	dormant buds	no	dormant buds(1 months)	1.29678
SRR5252884	dormant buds	no	dormant buds(2 months)	2.40808
SRR5252882	dormant buds	no	dormant buds(3 months)	3.67107
SRR5252883	dormant buds	no	dormant buds(3 months)	1.0527
SRR5252880	dormant buds	no	dormant buds(4 months)	5.73667
SRR5252881	dormant buds	no	dormant buds(4 months)	4.81573
SRR5252878	bud break	no	bud break	4.84961
SRR5252879	bud break	no	bud break	6.76204
SRR3744766	flower	no	mature	0.908905
SRR3744767	flower	no	mature	0.741101
SRR3744768	flower	no	mature	0.540083
SRR6308190	stigmas	no	open flowers	0.0387419
SRR6308181	styles	no	open flowers	0.30037
SRR6308188	filaments	no	open flowers	0.899584
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0.41361
SRR6308192	pollen	no	open flowers	0.878977
SRR6308191	petals	no	open flowers	0.385198
SRR6308194	sepals	no	open flowers	0.66355
SRR6308193	receptacles	no	open flowers	0.562346
SRR6308189	ovaries	no	open flowers	0.807006
SRR3384922	fruit	no	1 week after full bloom	1.31126
SRR3384921	fruit	no	2 week after full bloom	1.41935
SRR3384920	fruit	no	3 week after full bloom	1.3575
SRR3384919	fruit	no	4 week after full bloom	0.836089
SRR3384923	fruit	no	5 week after full bloom	0.700458
SRR3384918	fruit	no	6 week after full bloom	0.484712
SRR3384917	fruit	no	8 week after full bloom	0.760651
SRR3384916	fruit	no	10 week after full bloom	0.948623
SRR3384915	fruit	no	12 week after full bloom	1.70698
SRR3384914	fruit	no	14 week after full bloom	1.06589
SRR3384913	fruit	no	16 week after full bloom	0.373961
SRR3384912	fruit	no	18 week after full bloom	0.726953
SRR3384911	fruit	no	19 week after full bloom	0.769361
SRR3384910	fruit	no	20 week after full bloom	0.960056
SRR768128	whole fruit	no	25 days post anthesis	1.90953
SRR768129	whole fruit	no	35 days post anthesis	1.70752
SRR768130	whole fruit	no	60 days post anthesis	1.40629
SRR768131	whole fruit	no	87 days post anthesis	0.907311
SRR7343308	immature fruit flesh	no	immature	1.33433
SRR7343309	immature fruit flesh	no	immature	1.06445
SRR6320494	ripe fruit flesh	no	mature	0.898979
SRR5405143	ripe fruit peel	no	mature	0.965052
SRR6320572	ripe fruit peel	no	mature	1.12154
SRR7403504	fruit	uninfected	mature	0.616189
SRR7403506	fruit	uninfected	mature	0.717333
SRR7403507	fruit	uninfected	mature	0.693987
SRR7403500	fruit	infected with penicillium expansum	mature	0.617527
SRR7403501	fruit	infected with penicillium expansum	mature	0.723471
SRR7403508	fruit	infected with penicillium expansum	mature	0.625854
SRR7403502	fruit	infected with penicillium expansum	mature	0.913988
SRR7403503	fruit	infected with penicillium expansum	mature	1.23103
SRR7403505	fruit	infected with penicillium expansum	mature	0.755689
SRR1613973	Central seeds	no	20DAPF	4.17367
SRR1613974	Central seeds	no	20DAPF	3.95666
SRR1613975	Central seeds	no	20DAPF	4.01303
SRR1613976	Lateral seeds	no	20DAPF	3.5797
SRR1613977	Lateral seeds	no	20DAPF	3.56755
SRR1613978	Lateral seeds	no	20DAPF	3.56039
SRR3744786	stem	no	mature	0.750067
SRR3744787	stem	no	mature	0.802537
SRR3744772	stem	no	mature	0.840987
SRX765691	seedling shoot apex	no	4-6 week old seedling	2.96879
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	3.0096
SRR1089478	leaf	Virus-free	plantlets	1.17837
SRR1089477	leaf	ASGV-infected	plantlets	1.28644
SRR767660	leaf	uninfected	fully developed	2.12625
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	1.38475
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0.572117
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0.289055
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0.807852
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	1.18584
SRR6308182	young leaf	no	immature leaves	4.00194
SRR3744769	leaf	no	mature	0.568222
SRR3744770	leaf	no	mature	0.39696
SRR3744771	leaf	no	mature	0.639619
SRR5405145	leaf	no	mature	0.852512
SRR6320561	leaf	no	mature	0.746134