Gene detail

Detail information of MD06G1178300 Annotation

Gene ID	Annotation
MD06G1178300	RAC-like 10

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD06G1178300	mRNA	Chr06	31837760	31840749	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT3G48040.1	1	ARAC8;ATRAC8;ATROP10;ROP10\|Arabidopsis RAC-like 8;;RHO-RELATED PROTEIN FROM PLANTS 10
Pyrus communis	PCP006680.1	1	-
Rubus occidentalis	Ro05_G03531	1	-
Fragaria vesca	mrna09456.1	1	RHO-related protein from plants 10
Vitis vinifera	GSVIVT01007804001	1	RAC-like 10
Oryza sativa	LOC_Os02g50860.1	1	"ras-related protein, putative, expressed"
Oryza sativa	LOC_Os06g12790.1	1	"ras-related protein, putative, expressed"
Zea mays	GRMZM2G415327_P01	1	-
Zea mays	GRMZM2G001953_P01	0.745	Putative Rop family GTPase ROP8;

Gene Ontology

GO term	Description	Category
GO:0007264	small GTPase mediated signal transduction	biological_process
GO:0006886	intracellular protein transport	biological_process
GO:0016020	membrane	cellular component
GO:0005525	GTP binding	molecular_function
GO:0003924	GTPase activity	molecular_function
GO:0006913	nucleocytoplasmic transport	biological_process
GO:0006184	obsolete GTP catabolic process	biological_process
GO:0005622	intracellular	cellular component

KEGG

KO	Description	Enzyme
K04392	Ras-related C3 botulinum toxin substrate 1	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00071.18	Ras	10	180	1.40E-50

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	9.61716
SRR5252888	dormant buds	no	dormant buds(0 month)	7.79512
SRR5252889	dormant buds	no	dormant buds(0 month)	7.65419
SRR5252886	dormant buds	no	dormant buds(1 months)	4.14947
SRR5252887	dormant buds	no	dormant buds(1 months)	3.20732
SRR5252884	dormant buds	no	dormant buds(2 months)	6.24256
SRR5252882	dormant buds	no	dormant buds(3 months)	6.42148
SRR5252883	dormant buds	no	dormant buds(3 months)	6.9973
SRR5252880	dormant buds	no	dormant buds(4 months)	11.3754
SRR5252881	dormant buds	no	dormant buds(4 months)	10.4922
SRR5252878	bud break	no	bud break	3.67036
SRR5252879	bud break	no	bud break	5.83962
SRR3744766	flower	no	mature	1.96566
SRR3744767	flower	no	mature	1.90174
SRR3744768	flower	no	mature	2.13073
SRR6308190	stigmas	no	open flowers	3.54206
SRR6308181	styles	no	open flowers	7.27963
SRR6308188	filaments	no	open flowers	2.94385
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0.841753
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	2.6515
SRR6308194	sepals	no	open flowers	3.51702
SRR6308193	receptacles	no	open flowers	5.71688
SRR6308189	ovaries	no	open flowers	13.4928
SRR3384922	fruit	no	1 week after full bloom	12.9263
SRR3384921	fruit	no	2 week after full bloom	7.48403
SRR3384920	fruit	no	3 week after full bloom	2.57862
SRR3384919	fruit	no	4 week after full bloom	4.69836
SRR3384923	fruit	no	5 week after full bloom	6.10431
SRR3384918	fruit	no	6 week after full bloom	6.16486
SRR3384917	fruit	no	8 week after full bloom	4.65252
SRR3384916	fruit	no	10 week after full bloom	3.21909
SRR3384915	fruit	no	12 week after full bloom	2.40964
SRR3384914	fruit	no	14 week after full bloom	3.69399
SRR3384913	fruit	no	16 week after full bloom	4.2621
SRR3384912	fruit	no	18 week after full bloom	2.74984
SRR3384911	fruit	no	19 week after full bloom	4.31577
SRR3384910	fruit	no	20 week after full bloom	2.87852
SRR768128	whole fruit	no	25 days post anthesis	3.52122
SRR768129	whole fruit	no	35 days post anthesis	10.609
SRR768130	whole fruit	no	60 days post anthesis	5.15322
SRR768131	whole fruit	no	87 days post anthesis	3.62862
SRR7343308	immature fruit flesh	no	immature	2.66583
SRR7343309	immature fruit flesh	no	immature	1.77438
SRR6320494	ripe fruit flesh	no	mature	0.846189
SRR5405143	ripe fruit peel	no	mature	4.72426
SRR6320572	ripe fruit peel	no	mature	5.10995
SRR7403504	fruit	uninfected	mature	2.91707
SRR7403506	fruit	uninfected	mature	3.08146
SRR7403507	fruit	uninfected	mature	2.77017
SRR7403500	fruit	infected with penicillium expansum	mature	0.215409
SRR7403501	fruit	infected with penicillium expansum	mature	0.159831
SRR7403508	fruit	infected with penicillium expansum	mature	0.230442
SRR7403502	fruit	infected with penicillium expansum	mature	0.178165
SRR7403503	fruit	infected with penicillium expansum	mature	0.198996
SRR7403505	fruit	infected with penicillium expansum	mature	0.26831
SRR1613973	Central seeds	no	20DAPF	65.3507
SRR1613974	Central seeds	no	20DAPF	58.3836
SRR1613975	Central seeds	no	20DAPF	65.2095
SRR1613976	Lateral seeds	no	20DAPF	46.7223
SRR1613977	Lateral seeds	no	20DAPF	61.6604
SRR1613978	Lateral seeds	no	20DAPF	57.0863
SRR3744786	stem	no	mature	3.80107
SRR3744787	stem	no	mature	4.65989
SRR3744772	stem	no	mature	4.09675
SRX765691	seedling shoot apex	no	4-6 week old seedling	5.21399
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	5.43561
SRR1089478	leaf	Virus-free	plantlets	3.888
SRR1089477	leaf	ASGV-infected	plantlets	3.90948
SRR767660	leaf	uninfected	fully developed	13.5777
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	9.8864
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	1.88629
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	6.2544
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	7.4829
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	3.72359
SRR6308182	young leaf	no	immature leaves	9.50945
SRR3744769	leaf	no	mature	3.09576
SRR3744770	leaf	no	mature	3.53266
SRR3744771	leaf	no	mature	3.89125
SRR5405145	leaf	no	mature	4.10965
SRR6320561	leaf	no	mature	7.15174