Gene detail

Detail information of MD06G1191000 Annotation

Gene ID	Annotation
MD06G1191000	pectinesterase family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0163	pyrimidine ribonucleotide biosynthetic process

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD06G1191000	mRNA	Chr06	32724968	32725681	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT3G47670.1	1	Plant invertase/pectin methylesterase inhibitor superfamily protein
Prunus persica	Prupe.5G189700.1.p	1	pectin methylesterase 1
Pyrus communis	PCP003986.1	1	-
Pyrus x bretschneideri	Pbr011459.1	1	-
Rosa multiflora	Rmu_sc0028417.1_g000005.1	1	-
Rosa multiflora	Rmu_co8153612.1_g000001.1	0.739	-
Rubus occidentalis	Ro05_G03221	1	-
Fragaria vesca	mrna25980.1	1	Plant invertase/pectin methylesterase inhibitor superfamily protein
Populus trichocarpa	Potri.001G108200.1	1	Plant invertase/pectin methylesterase inhibitor superfamily protein
Populus trichocarpa	Potri.003G123500.1	0.627	Plant invertase/pectin methylesterase inhibitor superfamily protein
Nicotiana benthamiana	Niben101Scf05203g05022.1	1	Plant invertase/pectin methylesterase inhibitor superfamily protein LENGTH=276

Gene Ontology

GO term	Description	Category
GO:0030599	pectinesterase activity	molecular_function
GO:0004857	enzyme inhibitor activity	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04043.11	PMEI	77	221	3.90E-26

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	11.0179
SRR5252888	dormant buds	no	dormant buds(0 month)	17.7148
SRR5252889	dormant buds	no	dormant buds(0 month)	15.0492
SRR5252886	dormant buds	no	dormant buds(1 months)	16.8773
SRR5252887	dormant buds	no	dormant buds(1 months)	18.7345
SRR5252884	dormant buds	no	dormant buds(2 months)	24.8264
SRR5252882	dormant buds	no	dormant buds(3 months)	20.7496
SRR5252883	dormant buds	no	dormant buds(3 months)	20.6971
SRR5252880	dormant buds	no	dormant buds(4 months)	18.7967
SRR5252881	dormant buds	no	dormant buds(4 months)	18.3882
SRR5252878	bud break	no	bud break	10.4717
SRR5252879	bud break	no	bud break	10.7323
SRR3744766	flower	no	mature	44.8637
SRR3744767	flower	no	mature	43.8245
SRR3744768	flower	no	mature	46.1904
SRR6308190	stigmas	no	open flowers	20.8645
SRR6308181	styles	no	open flowers	22.2576
SRR6308188	filaments	no	open flowers	19.7344
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	11.3906
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	23.7832
SRR6308194	sepals	no	open flowers	23.0642
SRR6308193	receptacles	no	open flowers	12.3262
SRR6308189	ovaries	no	open flowers	19.6542
SRR3384922	fruit	no	1 week after full bloom	38.8655
SRR3384921	fruit	no	2 week after full bloom	30.2577
SRR3384920	fruit	no	3 week after full bloom	47.016
SRR3384919	fruit	no	4 week after full bloom	43.5675
SRR3384923	fruit	no	5 week after full bloom	44.3113
SRR3384918	fruit	no	6 week after full bloom	52.2538
SRR3384917	fruit	no	8 week after full bloom	83.2869
SRR3384916	fruit	no	10 week after full bloom	73.4378
SRR3384915	fruit	no	12 week after full bloom	72.9759
SRR3384914	fruit	no	14 week after full bloom	65.6779
SRR3384913	fruit	no	16 week after full bloom	78.9472
SRR3384912	fruit	no	18 week after full bloom	84.8612
SRR3384911	fruit	no	19 week after full bloom	73.6024
SRR3384910	fruit	no	20 week after full bloom	80.2818
SRR768128	whole fruit	no	25 days post anthesis	14.4579
SRR768129	whole fruit	no	35 days post anthesis	41.1625
SRR768130	whole fruit	no	60 days post anthesis	53.2384
SRR768131	whole fruit	no	87 days post anthesis	41.5572
SRR7343308	immature fruit flesh	no	immature	10.6304
SRR7343309	immature fruit flesh	no	immature	12.4038
SRR6320494	ripe fruit flesh	no	mature	65.653
SRR5405143	ripe fruit peel	no	mature	45.4948
SRR6320572	ripe fruit peel	no	mature	141.014
SRR7403504	fruit	uninfected	mature	101.589
SRR7403506	fruit	uninfected	mature	99.7293
SRR7403507	fruit	uninfected	mature	99.8839
SRR7403500	fruit	infected with penicillium expansum	mature	203.053
SRR7403501	fruit	infected with penicillium expansum	mature	171.237
SRR7403508	fruit	infected with penicillium expansum	mature	166.112
SRR7403502	fruit	infected with penicillium expansum	mature	139.719
SRR7403503	fruit	infected with penicillium expansum	mature	141.277
SRR7403505	fruit	infected with penicillium expansum	mature	142.223
SRR1613973	Central seeds	no	20DAPF	43.3527
SRR1613974	Central seeds	no	20DAPF	34.8038
SRR1613975	Central seeds	no	20DAPF	46.1021
SRR1613976	Lateral seeds	no	20DAPF	49.2275
SRR1613977	Lateral seeds	no	20DAPF	53.2891
SRR1613978	Lateral seeds	no	20DAPF	44.3768
SRR3744786	stem	no	mature	43.0334
SRR3744787	stem	no	mature	43.2358
SRR3744772	stem	no	mature	43.3307
SRX765691	seedling shoot apex	no	4-6 week old seedling	7.25558
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	8.40545
SRR1089478	leaf	Virus-free	plantlets	52.7205
SRR1089477	leaf	ASGV-infected	plantlets	44.1927
SRR767660	leaf	uninfected	fully developed	24.1028
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	81.2478
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	26.1296
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	59.3455
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	39.0518
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	92.0741
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	51.7579
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	68.4592
SRR6308182	young leaf	no	immature leaves	9.46429
SRR3744769	leaf	no	mature	41.3535
SRR3744770	leaf	no	mature	39.3049
SRR3744771	leaf	no	mature	37.0915
SRR5405145	leaf	no	mature	38.6635
SRR6320561	leaf	no	mature	28.2821