Gene detail

Detail information of MD06G1217900 Annotation

Gene ID	Annotation
MD06G1217900	zinc finger protein-related

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0472	large subunit GTPase 1 [EC:3.6.1.-] RNA polymerase-associated protein LEO1 ATP-dependent RNA helicase DDX46/PRP5 [EC:3.6.4.13] PAFB

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD06G1217900	mRNA	Chr06	34990510	34998136	-

Sequences

CDS:

MD06G1217900

GTTATCAGAGCAAGCGCCCAGCTAGAGAGAGAAAGAGAAGGATAAAGCGAGAGAGAGAGAGAGAGAGAGAGAGAATTCTCCGATTTCCTGGAAGACGGGGATGGCGGCGCCGTTAACGGATGGAGGCGGAGGACTGGTGGTTCTGTCGAATTCCGTCAACAAGGTGGAATCGTCATCGGTCAATGGCTGCTTGGCGAGCACGGAGGAGCCGACAAGGAGGCCGATTCTGATTTTCCTGTTCTTTCACAAGGCAATTCGGAAGGAGCTCGATGCGCTCCACCGACTGGCCATGGCCTTCGCCACCGGAAAGAGAACCGATATACGGCCGCTGCTCGAGCGCTACCATTTTTTGAGATCGATTTACAAGCACCACTCCAATGCCGAAGACGAGGTAATCTTTCCAGCTCTTGATATACGCGTGAAGAATGTAGCACAAACATACTCGCTTGAGCATAAGGGCGAAACAAATCTTTTTGATCATCTATTTGAGCTGCTAAGTTCAAATGCGAAAAATGATGAAAATTTCCCAAGAGAGCTAGCGTCTTGTACAGGAGCTCTACAAACATCAGTTAGCCAACACCTGGCAAAGGAGGAGGAACAGGTCCTTCCCTTACTCATTGAGAAATTTTCAGTTGAAGAGCAGGCAGCTCTGGTCTGGCAGTTTCTGTGCAGCATTCCTGTGAATATGATGGCCGAGTTCCTTCCATGGCTTTCATCATCTGTTTCACCTGATGAACATCAGGATTTGCAAAAATGCTTAAGGAAGATTGTTCCAGAGGAAAAGCTTCTTCAACAAGTCATTTTCACCTGGATGGGAGGTAGAAACAGTGTTGACATGTTCGGAAGTTGTCTAGATGCCCCTCAGTTCCAATGTTGTGTGGATTCTGGTGCTAGCACATCAAGTCAACATATGGAGAAGGAAAATTCTGCATGCGAGTGCAGGACTGGGAAAAGGAAGTACTTAGAATCAAGTACTGATGTTTCTGATAACATTGCAGGGCACCCAATAAATGAAATACTTCTTTGGCATAATGCCATTAAAAGGGAGTTAAATGAGATAGCTGAGGAGGCTAGGAAGATACAATGTTATGGAGATTTTACTAATATATCAGCTTTCAATGAGAGGTTGCAATTTATCGCTGAAGTTTGCATCTTTCACAGTATTGCTGAGGACAAGGTCATATTTCCAGCAGTTGATGGAAAAATTTCCTTTTTCCAAGAGCATGCTGAAGAAGAAAGTCAATTCAACGAATTCAGGTGTTTGATTGAAAATATTCAAAGTGCAGGAGCCATCTCTACTTCCGCTGATTTTTATGCAAAGTTATGTTCTCATGCTGATCAAATAATGGAAACTATCCAGAGGCACTTTAGCAATGAAGAAGTTCAGGTTCTTCCACTTGCTCGAGAGCACTTCAGCTTCAAAAGGCAGCGTGAACTTTTGTATCAATCTTTGTGTATGATGCCCTTAAGACTGATTGAGCGTGTTTTACCTTGGCTGGTTGGAACGTTGACTGAAGATGAAACAAAGAATTTTCTCAAAAACATGCAGTTAGCAGTGCCTGATTCTGCTTTAGTAACACTCTTTTCGGGATGGGCATGCAAGGCTCGTAGTCAGGGTTCATGCTTGTCGTCAAGTGCAATTGGTTGCTGTCCTGTTAAAAGCTTCACTGATATTGAAGAAGGTTTTGTTCGTTCAGCATGTGCGTGTTCTTCCGCATCGTCTGCTAGAGACAGCCTGACACCAGCTCAAGCAAATAATGTGAAGAGGCCAGCCAAACGAAATGTTTCTATGTCATGCAAACACAATGGTAGTGACCAGTCCTGCCGTGTCCCAGGTTTAGGAGTGAACAGCAATAATCTTGGGCCGAGTTCTCTTTTTGGGGCCAAGTCTTTGCGATCCTTATCTTTCAGCTCTGGTGCCCCATCACTGAATTCCAGTCTTTTTGTCTGGGAAATGGATCATTCTTCTTCTGATATTGGCTGTGGGGAACGCCCTATTGATACTATTTTTAAATTTCATAAAGCCATACGCAAAGATTTGGAGTATTTAGATAGTGAATCTGGAAAGCTTAGTTATTGTGATGAAACCACTCTTCGGCAGTTCATAGGAAGGTTTCGTTTACTGTGGGGATTATACAGAGCGCATAGTAATGCGGAGGATGATATAGTGTTTCCTGCACTGGAATCCAAAGAGGCGCTTCATAATGTGAGTCACTCATACACACTGGACCATAAACAGGAGGAGAAATTATTTGAAGATATCTCATGTGTTCTGTCGGAGCTTTCTCACCTTCATAAAAGCTTGCAAAAGGATCACATGGACGAGGATTCAGCTGGAAGTAGCATTGGCTTTTCTGCTGCTAATGGTAACTACTCTAAAAAGTATGACAAGCTAGCTACGAAGCTTCAAGGAATGTGCAAATCAATCAAGGTTACACTAGATCAGCATATTTTCAGGGAAGAACTGGAGCTGTGGCCATTATTCGGCAGACACTTCACTGTGGAGGAGCAAGACAAAATAGTTGGCCGCATTATTGGGACCACGGGTGCTGAGGTGCTCCAATCAATGTTACCATGGGTGACTTCTGCACTTACTCAGGATGAACAGAACAAAATGATGGATACGTGGAAGCAAGCAACTAAAAATACAATGTTCAATGAGTGGCTTAATGAATGCTGGAAAGGAATTTCAGAATTAACTTCACAGACTGAAACATCGGAAAGTAGCACTCCTCAAAAAGGGGTTGAATTTCAAGAAAGCTTGGATCAGACTGATCAGATGTTCAAACCTGGTTGGAAGGATATTTTCCGTATGAATCAAAATGAACTTGAGTCAGAGATCAGAAAGGTTTATCGTGATGCGACTCTTGATCCAAGGAGAAAGGCATATCTTGTGCAGAATCTTATGACTAGCCGCTGGATAGCTACTCAGCAGAAGTTACCTCAAGAAATAGCTGGAGAATCATCTAATGGTGAAGACATGGTTGGACACTCACCAATGTATCGAGATGCTGAGAAAAAAGAGTTTGGGTGTGAACACTATAAAAGAAACTGTAAACTCCGAGCTGCTTGCTGTGGCAAGTTATTTACGTGTAGATTTTGCCATGACAATGTGAGCGATCATTCAATGGATAGGAAAGCAACATCTGAAATGATGTGCATGCGCTGCCTGACCGTTCAGCCTGTTGGGCCAATATGCACTACACCTTCATGCAATGAACTCTCCATGGCAAAGTACTACTGCAATATATGTAAATTTTTTGACGATGAAAGGACTGTGTATCATTGCCCATTTTGCAATTTATGCCGACTTGGAAAGGGTCTTGGCATTGACTTCTTTCATTGCATGACATGCAATTGTTGCCTGGGGATAAAGTTAGTGAACCACAAGTGCCTGGAGAAGAGTTTAGAAACAAATTGCCCCATCTGCTGTGATTTCTTATTCACATCAAGTGCAACGGTTCGAGCTCTGCCTTGTGGCCACTACATGCATTCTGCTTGCTTTCAGGCATACACTTCCAGTCACTATACTTGTCCAATTTGCAGCAAATCTTTGGGAGATATGGCAGTTTACTTTGGCATGCTTGACGCATTATTGGCTGCCGAGCAGCTTCCAGAGGAATACAGGAACCGTTGTCAGGACATTCTATGTAACGACTGTGATCGAAAGGGTACCTCACGGTTTCACTGGCTATATCACAAGTGCGGGAACTGCGGATCTTACAACACCCGGGTGATCAAGGGGGAGACATCATATACCGACTGCTCAACACCGAACTAAAGACAGGTTTTATTTTTTGACAAAGAGATGTATACATGTTGGTTTGTAGATACTTGTACAGGCAATTCAATTTTCCCGTGACCATAAAACTGGTTATTTGACATCCGACACAGCAAATTTTGTAGAAGCCTGGTAAGTATCATCCTGCCTTGGTTTTGAGACATTCATTTTTCGAACGGAGCGCATTGAAAGCCATCTGTATATAAATTTGCTAGTGTAGCTTTTTCTTTGGTGCTGTAAATTTTTCGATCCATGATTTCGTTGGATTTTTCCCTCCTTTCTTACGTTAACGTTTTCGGTCCTGTTTACTTAAACTGTAAAATTTTCCACCACGCTTTGTTCACTTCTCTGTCCAAAAGTTGCACCTGGACGCACGCTAGGACATTTTTTCTTCCATTGTGAGCATCAGATGCAACTTTG

Protein:

Gene family

Gene family	Subfamily
Ubiquitin Family	RING

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT3G18290.1	1	BTS;EMB2454\|BRUTUS;embryo defective 2454
Pyrus communis	PCP026450.1	1	-
Pyrus x bretschneideri	Pbr020302.1	1	-
Rosa multiflora	Rmu_sc0002952.1_g000002.1	1	-
Rubus occidentalis	Ro05_G16319	1	-
Vitis vinifera	GSVIVT01008317001	1	zinc finger protein-related
Solanum lycopersicum	Solyc03g119300.2.1	1	zinc finger protein-related
Populus trichocarpa	Potri.012G055100.1	1	zinc finger protein-related
Oryza sativa	LOC_Os01g49470.1	1	"E3 ubiquitin ligase, putative, expressed"
Oryza sativa	LOC_Os05g47780.1	1	"E3 ubiquitin ligase, putative, expressed"
Zea mays	GRMZM2G175661_P01	1	Putative zinc finger protein

Gene Ontology

GO term	Description	Category
GO:0008270	zinc ion binding	molecular_function
GO:0005515	protein binding	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01814.19	Hemerythrin	46	172	2.10E-12
PF01814.19	Hemerythrin	301	434	2.10E-06
PF01814.19	Hemerythrin	632	794	1.40E-07
PF05495.8	zf-CHY	978	1053	1.90E-20
PF13639.2	zf-RING_2	1106	1148	1.40E-07
PF14599.2	zinc_ribbon_6	1153	1211	1.20E-24

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	6.6739
SRR5252888	dormant buds	no	dormant buds(0 month)	15.1558
SRR5252889	dormant buds	no	dormant buds(0 month)	14.5345
SRR5252886	dormant buds	no	dormant buds(1 months)	15.6558
SRR5252887	dormant buds	no	dormant buds(1 months)	14.7653
SRR5252884	dormant buds	no	dormant buds(2 months)	20.5877
SRR5252882	dormant buds	no	dormant buds(3 months)	15.9264
SRR5252883	dormant buds	no	dormant buds(3 months)	18.6409
SRR5252880	dormant buds	no	dormant buds(4 months)	14.2573
SRR5252881	dormant buds	no	dormant buds(4 months)	12.7442
SRR5252878	bud break	no	bud break	14.9167
SRR5252879	bud break	no	bud break	10.9832
SRR3744766	flower	no	mature	5.81633
SRR3744767	flower	no	mature	6.76274
SRR3744768	flower	no	mature	6.39878
SRR6308190	stigmas	no	open flowers	8.51639
SRR6308181	styles	no	open flowers	8.39042
SRR6308188	filaments	no	open flowers	7.62684
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	12.011
SRR6308192	pollen	no	open flowers	46.4073
SRR6308191	petals	no	open flowers	6.67537
SRR6308194	sepals	no	open flowers	14.9317
SRR6308193	receptacles	no	open flowers	6.61371
SRR6308189	ovaries	no	open flowers	7.87847
SRR3384922	fruit	no	1 week after full bloom	2.9217
SRR3384921	fruit	no	2 week after full bloom	6.20347
SRR3384920	fruit	no	3 week after full bloom	2.82038
SRR3384919	fruit	no	4 week after full bloom	3.61159
SRR3384923	fruit	no	5 week after full bloom	4.10896
SRR3384918	fruit	no	6 week after full bloom	3.52661
SRR3384917	fruit	no	8 week after full bloom	3.42795
SRR3384916	fruit	no	10 week after full bloom	3.48724
SRR3384915	fruit	no	12 week after full bloom	4.06796
SRR3384914	fruit	no	14 week after full bloom	3.64474
SRR3384913	fruit	no	16 week after full bloom	3.38563
SRR3384912	fruit	no	18 week after full bloom	3.34337
SRR3384911	fruit	no	19 week after full bloom	3.5652
SRR3384910	fruit	no	20 week after full bloom	3.18132
SRR768128	whole fruit	no	25 days post anthesis	5.31235
SRR768129	whole fruit	no	35 days post anthesis	2.97893
SRR768130	whole fruit	no	60 days post anthesis	3.66261
SRR768131	whole fruit	no	87 days post anthesis	3.82203
SRR7343308	immature fruit flesh	no	immature	6.96307
SRR7343309	immature fruit flesh	no	immature	6.06118
SRR6320494	ripe fruit flesh	no	mature	6.38767
SRR5405143	ripe fruit peel	no	mature	5.59316
SRR6320572	ripe fruit peel	no	mature	7.63073
SRR7403504	fruit	uninfected	mature	4.20968
SRR7403506	fruit	uninfected	mature	4.14972
SRR7403507	fruit	uninfected	mature	4.57422
SRR7403500	fruit	infected with penicillium expansum	mature	5.65552
SRR7403501	fruit	infected with penicillium expansum	mature	6.75409
SRR7403508	fruit	infected with penicillium expansum	mature	6.91452
SRR7403502	fruit	infected with penicillium expansum	mature	8.62031
SRR7403503	fruit	infected with penicillium expansum	mature	8.40912
SRR7403505	fruit	infected with penicillium expansum	mature	8.27441
SRR1613973	Central seeds	no	20DAPF	4.20075
SRR1613974	Central seeds	no	20DAPF	4.36761
SRR1613975	Central seeds	no	20DAPF	3.81345
SRR1613976	Lateral seeds	no	20DAPF	3.76055
SRR1613977	Lateral seeds	no	20DAPF	3.51329
SRR1613978	Lateral seeds	no	20DAPF	3.87119
SRR3744786	stem	no	mature	8.7625
SRR3744787	stem	no	mature	8.62908
SRR3744772	stem	no	mature	9.59564
SRX765691	seedling shoot apex	no	4-6 week old seedling	7.2885
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	5.27636
SRR1089478	leaf	Virus-free	plantlets	4.0516
SRR1089477	leaf	ASGV-infected	plantlets	5.21927
SRR767660	leaf	uninfected	fully developed	4.40637
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0.932818
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	5.20907
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	1.89697
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	3.11618
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	4.52299
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	3.417
SRR6308182	young leaf	no	immature leaves	5.83342
SRR3744769	leaf	no	mature	7.13912
SRR3744770	leaf	no	mature	6.59239
SRR3744771	leaf	no	mature	6.3097
SRR5405145	leaf	no	mature	10.2106
SRR6320561	leaf	no	mature	7.90083